Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LINC02560-201ENST00000596379 459 ntBASIC14.57□□□□□ -0.08
SIX3O95343 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.57□□□□□ -0.08
SIX3O95343 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
SIX3O95343 AL136172.1-201ENST00000598590 1394 ntBASIC14.57□□□□□ -0.08
SIX3O95343 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SIX3O95343 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
SIX3O95343 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SIX3O95343 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.56□□□□□ -0.08
SIX3O95343 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.56□□□□□ -0.08
SIX3O95343 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SIX3O95343 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.56□□□□□ -0.08
SIX3O95343 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.56□□□□□ -0.08
SIX3O95343 WFDC1-204ENST00000613603 549 ntBASIC14.56□□□□□ -0.08
SIX3O95343 CU634019.7-201ENST00000624153 1185 ntBASIC14.56□□□□□ -0.08
SIX3O95343 FP236241.2-201ENST00000624906 1185 ntBASIC14.56□□□□□ -0.08
SIX3O95343 AL603764.1-201ENST00000636452 321 ntBASIC14.56□□□□□ -0.08
SIX3O95343 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 KRT8P35-201ENST00000483942 1338 ntBASIC14.56□□□□□ -0.08
SIX3O95343 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.56□□□□□ -0.08
SIX3O95343 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SIX3O95343 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 CICP16-201ENST00000502609 2813 ntBASIC14.56□□□□□ -0.08
SIX3O95343 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SIX3O95343 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SIX3O95343 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 MSTO2P-201ENST00000314835 1709 ntBASIC14.55□□□□□ -0.08
SIX3O95343 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 AC093433.1-201ENST00000458048 571 ntBASIC14.55□□□□□ -0.08
SIX3O95343 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ENPP7P5-201ENST00000541031 1031 ntBASIC14.55□□□□□ -0.08
SIX3O95343 RN7SL204P-201ENST00000582831 262 ntBASIC14.55□□□□□ -0.08
SIX3O95343 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 AC239800.4-201ENST00000603712 296 ntBASIC14.55□□□□□ -0.08
SIX3O95343 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.55□□□□□ -0.08
SIX3O95343 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms