Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC24.62■■□□□ 1.53
CUX2O14529 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC24.62■■□□□ 1.53
CUX2O14529 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC24.62■■□□□ 1.53
CUX2O14529 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX2O14529 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CUX2O14529 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC24.62■■□□□ 1.53
CUX2O14529 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC24.62■■□□□ 1.53
CUX2O14529 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC24.61■■□□□ 1.53
CUX2O14529 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 SAT1-201ENST00000379251 801 ntTSL 2 BASIC24.61■■□□□ 1.53
CUX2O14529 SAT1-202ENST00000379253 909 ntTSL 2 BASIC24.61■■□□□ 1.53
CUX2O14529 SAT1-203ENST00000379254 868 ntTSL 3 BASIC24.61■■□□□ 1.53
CUX2O14529 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC24.61■■□□□ 1.53
CUX2O14529 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC24.61■■□□□ 1.53
CUX2O14529 AL133467.4-201ENST00000602953 725 ntBASIC24.61■■□□□ 1.53
CUX2O14529 ESR1-214ENST00000638569 132 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC24.61■■□□□ 1.53
CUX2O14529 AP005117.1-202ENST00000581724 1908 ntBASIC24.61■■□□□ 1.53
CUX2O14529 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CUX2O14529 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC24.61■■□□□ 1.53
CUX2O14529 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
CUX2O14529 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 HNRNPA1P27-201ENST00000412087 955 ntBASIC24.6■■□□□ 1.53
CUX2O14529 DNM1P48-201ENST00000419538 439 ntBASIC24.6■■□□□ 1.53
CUX2O14529 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 HNRNPA1P59-201ENST00000430583 918 ntBASIC24.6■■□□□ 1.53
CUX2O14529 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC24.6■■□□□ 1.53
CUX2O14529 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 GAS7-216ENST00000583882 553 ntTSL 5 BASIC24.6■■□□□ 1.53
CUX2O14529 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC24.6■■□□□ 1.53
CUX2O14529 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CUX2O14529 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC24.6■■□□□ 1.53
CUX2O14529 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
CUX2O14529 DKFZP434H168-201ENST00000567381 1905 ntBASIC24.6■■□□□ 1.53
CUX2O14529 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC24.59■■□□□ 1.53
CUX2O14529 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 AC092850.2-201ENST00000623821 2697 ntBASIC24.59■■□□□ 1.53
CUX2O14529 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CUX2O14529 TPT1P9-201ENST00000413759 514 ntBASIC24.59■■□□□ 1.53
CUX2O14529 HNRNPA1P21-201ENST00000424115 961 ntBASIC24.59■■□□□ 1.53
CUX2O14529 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC24.59■■□□□ 1.53
CUX2O14529 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 AC132812.1-201ENST00000583145 892 ntBASIC24.59■■□□□ 1.53
CUX2O14529 BOLA3P2-201ENST00000586496 323 ntBASIC24.59■■□□□ 1.53
CUX2O14529 AL590556.2-202ENST00000636906 844 ntBASIC24.59■■□□□ 1.53
CUX2O14529 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC24.59■■□□□ 1.53
CUX2O14529 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
CUX2O14529 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CUX2O14529 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CUX2O14529 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CUX2O14529 AL359092.2-201ENST00000423330 585 ntBASIC24.58■■□□□ 1.53
CUX2O14529 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
CUX2O14529 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC24.58■■□□□ 1.53
CUX2O14529 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms