Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
TRIM49D1C9J1S8 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC130686.1-201ENST00000622936 2466 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC005252.3-201ENST00000623855 2258 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AL139094.1-201ENST00000405549 1188 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC241585.1-201ENST00000433527 519 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RARRES2P5-201ENST00000564013 466 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 MYADML-201ENST00000474610 2147 ntBASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
TRIM49D1C9J1S8 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC067863.1-201ENST00000494933 530 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC026434.2-201ENST00000506094 1078 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC135586.1-201ENST00000539323 574 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 AC093813.1-201ENST00000605066 256 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 BX539320.1-201ENST00000623759 877 ntBASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM49D1C9J1S8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms