Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC079781.5-202ENST00000641784 3743 ntBASIC14.69□□□□□ -0.06
MKS1Q9NXB0 AC111170.3-201ENST00000624282 2464 ntBASIC14.69□□□□□ -0.06
MKS1Q9NXB0 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MKS1Q9NXB0 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MKS1Q9NXB0 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MKS1Q9NXB0 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AL590440.2-201ENST00000641973 1595 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 RN7SKP230-201ENST00000365642 335 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC135586.1-201ENST00000539323 574 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC025678.2-201ENST00000562061 970 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC008738.7-201ENST00000609744 511 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 AC027612.1-201ENST00000445234 2395 ntBASIC14.68□□□□□ -0.06
MKS1Q9NXB0 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MKS1Q9NXB0 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 TREML5P-201ENST00000421694 576 ntBASIC14.67□□□□□ -0.06
MKS1Q9NXB0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 SNHG9-202ENST00000564014 471 ntBASIC14.67□□□□□ -0.06
MKS1Q9NXB0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 AC004790.1-201ENST00000612686 536 ntBASIC14.67□□□□□ -0.06
MKS1Q9NXB0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
MKS1Q9NXB0 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms