Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 KRT18P36-201ENST00000411618 1276 ntBASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AC133540.1-201ENST00000620845 1019 ntBASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.73■□□□□ 0.11
PAAF1Q9BRP4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC018629.1-201ENST00000623381 1736 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 ELK2AP-201ENST00000392510 1007 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC006335.1-201ENST00000445200 547 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 EEF1DP6-201ENST00000449232 372 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 CEP164P1-201ENST00000455142 418 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC242376.1-201ENST00000559033 726 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC012044.1-201ENST00000603431 297 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 DBET-201ENST00000630918 3363 ntBASIC15.72■□□□□ 0.11
PAAF1Q9BRP4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 AC239868.1-201ENST00000369385 493 ntBASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 HINT2P1-201ENST00000419438 481 ntBASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 PRKXP1-201ENST00000561423 1122 ntBASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 MIR4754-201ENST00000582477 89 ntBASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms