Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.77■□□□□ 0.27
CCNA1P78396 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
CCNA1P78396 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.77■□□□□ 0.27
CCNA1P78396 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CCNA1P78396 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCNA1P78396 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
CCNA1P78396 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.76■□□□□ 0.27
CCNA1P78396 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCNA1P78396 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.76■□□□□ 0.27
CCNA1P78396 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.76■□□□□ 0.27
CCNA1P78396 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.76■□□□□ 0.27
CCNA1P78396 DUX4L50-201ENST00000455245 715 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 RN7SL530P-201ENST00000485097 298 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 RN7SL81P-201ENST00000493781 261 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.76■□□□□ 0.27
CCNA1P78396 AC003686.1-201ENST00000550956 1034 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
CCNA1P78396 MIR4522-201ENST00000584932 87 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CCNA1P78396 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
CCNA1P78396 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCNA1P78396 AC046158.3-201ENST00000624947 2558 ntBASIC16.76■□□□□ 0.27
CCNA1P78396 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCNA1P78396 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
CCNA1P78396 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 Z69890.1-201ENST00000382990 339 ntBASIC16.75■□□□□ 0.27
CCNA1P78396 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.75■□□□□ 0.27
CCNA1P78396 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC16.75■□□□□ 0.27
CCNA1P78396 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 AC009084.3-201ENST00000623356 437 ntBASIC16.75■□□□□ 0.27
CCNA1P78396 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 AC025271.4-201ENST00000621477 1726 ntBASIC16.75■□□□□ 0.27
CCNA1P78396 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
CCNA1P78396 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CCNA1P78396 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.75■□□□□ 0.27
CCNA1P78396 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.75■□□□□ 0.27
CCNA1P78396 AC092135.3-201ENST00000624151 1846 ntBASIC16.75■□□□□ 0.27
CCNA1P78396 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCNA1P78396 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
CCNA1P78396 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCNA1P78396 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCNA1P78396 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCNA1P78396 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCNA1P78396 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.74■□□□□ 0.27
CCNA1P78396 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms