Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 RPL35P9-201ENST00000446059 350 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC14.6□□□□□ -0.07
CXCL12P48061 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.6□□□□□ -0.07
CXCL12P48061 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.6□□□□□ -0.07
CXCL12P48061 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.6□□□□□ -0.07
CXCL12P48061 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.6□□□□□ -0.07
CXCL12P48061 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 AC140113.1-201ENST00000603467 169 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 AC002472.4-201ENST00000641915 272 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.6□□□□□ -0.07
CXCL12P48061 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.6□□□□□ -0.07
CXCL12P48061 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A21P-201ENST00000510875 1396 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A15P-201ENST00000514465 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A6P-201ENST00000515148 1394 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A16P-201ENST00000526662 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A9P-201ENST00000527940 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A5P-201ENST00000528738 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A14P-201ENST00000530386 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 FAM90A13P-201ENST00000534703 1395 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 AL136172.1-201ENST00000598590 1394 ntBASIC14.6□□□□□ -0.07
CXCL12P48061 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CXCL12P48061 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.59□□□□□ -0.07
CXCL12P48061 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.59□□□□□ -0.07
CXCL12P48061 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CXCL12P48061 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.59□□□□□ -0.07
CXCL12P48061 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.59□□□□□ -0.07
CXCL12P48061 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.59□□□□□ -0.07
CXCL12P48061 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.59□□□□□ -0.07
CXCL12P48061 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.59□□□□□ -0.07
CXCL12P48061 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 RN7SL396P-201ENST00000471086 295 ntBASIC14.59□□□□□ -0.07
CXCL12P48061 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.59□□□□□ -0.07
CXCL12P48061 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 MIR2392-201ENST00000584881 84 ntBASIC14.59□□□□□ -0.07
CXCL12P48061 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 AC007250.1-201ENST00000608934 338 ntBASIC14.59□□□□□ -0.07
CXCL12P48061 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 AC011471.3-201ENST00000623576 402 ntBASIC14.59□□□□□ -0.07
CXCL12P48061 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CXCL12P48061 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CXCL12P48061 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.59□□□□□ -0.07
CXCL12P48061 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
CXCL12P48061 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms