Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 BANF1P3-201ENST00000412556 261 ntBASIC16.03■□□□□ 0.16
CHRNA1P02708 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CHRNA1P02708 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.03■□□□□ 0.16
CHRNA1P02708 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.03■□□□□ 0.16
CHRNA1P02708 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.03■□□□□ 0.16
CHRNA1P02708 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.03■□□□□ 0.16
CHRNA1P02708 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.03■□□□□ 0.16
CHRNA1P02708 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.03■□□□□ 0.16
CHRNA1P02708 AC139712.1-201ENST00000378256 1875 ntBASIC16.03■□□□□ 0.16
CHRNA1P02708 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.03■□□□□ 0.16
CHRNA1P02708 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.03■□□□□ 0.16
CHRNA1P02708 AC132872.4-202ENST00000622924 2756 ntBASIC16.03■□□□□ 0.16
CHRNA1P02708 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 AC006504.5-208ENST00000588784 2401 ntBASIC16.03■□□□□ 0.16
CHRNA1P02708 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CHRNA1P02708 AC009093.10-201ENST00000641956 1442 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CHRNA1P02708 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 AHCYP4-201ENST00000419201 1315 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 AC074138.1-201ENST00000611182 1303 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CHRNA1P02708 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.02■□□□□ 0.16
CHRNA1P02708 RNA5SP359-201ENST00000364838 113 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 RPSAP31-201ENST00000416648 895 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC16.02■□□□□ 0.16
CHRNA1P02708 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CHRNA1P02708 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.02■□□□□ 0.16
CHRNA1P02708 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.02■□□□□ 0.16
CHRNA1P02708 MBP-227ENST00000526111 581 ntTSL 4 BASIC16.02■□□□□ 0.16
CHRNA1P02708 AL109954.1-202ENST00000564051 2148 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.02■□□□□ 0.16
CHRNA1P02708 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.02■□□□□ 0.16
CHRNA1P02708 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.02■□□□□ 0.16
CHRNA1P02708 RN7SL736P-201ENST00000613111 269 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 AC242376.2-201ENST00000619355 883 ntBASIC16.02■□□□□ 0.16
CHRNA1P02708 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CHRNA1P02708 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CHRNA1P02708 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHRNA1P02708 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.02■□□□□ 0.15
CHRNA1P02708 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CHRNA1P02708 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CHRNA1P02708 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CHRNA1P02708 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CHRNA1P02708 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.01■□□□□ 0.15
CHRNA1P02708 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CHRNA1P02708 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CHRNA1P02708 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CHRNA1P02708 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.01■□□□□ 0.15
CHRNA1P02708 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.01■□□□□ 0.15
CHRNA1P02708 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CHRNA1P02708 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.01■□□□□ 0.15
CHRNA1P02708 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.01■□□□□ 0.15
CHRNA1P02708 RPSAP15-201ENST00000448168 861 ntBASIC16.01■□□□□ 0.15
CHRNA1P02708 AP000358.1-201ENST00000456260 156 ntBASIC16.01■□□□□ 0.15
CHRNA1P02708 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.01■□□□□ 0.15
CHRNA1P02708 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms