Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC152010.1-201ENST00000415779 2006 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AL162726.2-201ENST00000438986 1017 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ELK1P1-201ENST00000485699 580 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 KRT18P25-201ENST00000508931 1278 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 API5-211ENST00000534695 560 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC132872.1-201ENST00000566986 1195 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AP001063.1-201ENST00000568332 529 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC087386.2-201ENST00000623212 4637 ntBASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HIF3AQ9Y2N7 AC003102.2-201ENST00000589195 1469 ntBASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 SALL4P5-201ENST00000419001 1760 ntBASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 CLUHP6-201ENST00000580789 941 ntBASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HIF3AQ9Y2N7 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms