Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.1□□□□□ -0.47
FOXA2Q9Y261 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AL359881.3-201ENST00000602640 1721 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 DGCR5-201ENST00000399539 862 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 RN7SL692P-201ENST00000464677 288 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TAF8-206ENST00000472818 719 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ENPP7P5-201ENST00000541031 1031 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AL359711.2-201ENST00000563105 872 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AC124283.3-201ENST00000570869 594 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 KRT8P22-201ENST00000562317 1415 ntBASIC12.09□□□□□ -0.47
FOXA2Q9Y261 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
FOXA2Q9Y261 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
FOXA2Q9Y261 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
FOXA2Q9Y261 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 GOLGA8VP-201ENST00000559009 1798 ntBASIC12.08□□□□□ -0.48
FOXA2Q9Y261 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
FOXA2Q9Y261 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 322.4 ms