Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MIR3615-201ENST00000581999 87 ntBASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 STX1A-203ENST00000395155 783 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 MPRIPP1-201ENST00000452433 1089 ntBASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AL844908.2-201ENST00000609461 460 ntBASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PDLIM3Q53GG5 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms