Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.41□□□□□ -0.1
HMGCS1Q01581 TMEM261P1-201ENST00000604899 340 ntBASIC14.41□□□□□ -0.1
HMGCS1Q01581 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGCS1Q01581 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HMGCS1Q01581 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AL391825.1-201ENST00000457671 1364 ntBASIC14.4□□□□□ -0.1
HMGCS1Q01581 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ELK1P1-201ENST00000485699 580 ntBASIC14.4□□□□□ -0.1
HMGCS1Q01581 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGCS1Q01581 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGCS1Q01581 SALL4P5-201ENST00000419001 1760 ntBASIC14.39□□□□□ -0.11
HMGCS1Q01581 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGCS1Q01581 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGCS1Q01581 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGCS1Q01581 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGCS1Q01581 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGCS1Q01581 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGCS1Q01581 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGCS1Q01581 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms