Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.15
VCPP55072 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
VCPP55072 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
VCPP55072 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VCPP55072 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.02■□□□□ 0.15
VCPP55072 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VCPP55072 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.01■□□□□ 0.15
VCPP55072 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 MIR1202-201ENST00000408529 83 ntBASIC16.01■□□□□ 0.15
VCPP55072 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.01■□□□□ 0.15
VCPP55072 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 AC134698.3-201ENST00000523880 214 ntBASIC16.01■□□□□ 0.15
VCPP55072 MIR3907-201ENST00000579424 151 ntBASIC16.01■□□□□ 0.15
VCPP55072 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 AC018635.2-201ENST00000608625 364 ntBASIC16.01■□□□□ 0.15
VCPP55072 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.01■□□□□ 0.15
VCPP55072 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.01■□□□□ 0.15
VCPP55072 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VCPP55072 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16■□□□□ 0.15
VCPP55072 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16■□□□□ 0.15
VCPP55072 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
VCPP55072 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
VCPP55072 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
VCPP55072 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
VCPP55072 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16■□□□□ 0.15
VCPP55072 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 AC069218.1-201ENST00000435269 762 ntBASIC16■□□□□ 0.15
VCPP55072 SPTLC1P5-201ENST00000450718 252 ntBASIC16■□□□□ 0.15
VCPP55072 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16■□□□□ 0.15
VCPP55072 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16■□□□□ 0.15
VCPP55072 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16■□□□□ 0.15
VCPP55072 AC025181.2-201ENST00000606994 802 ntBASIC16■□□□□ 0.15
VCPP55072 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16■□□□□ 0.15
VCPP55072 AC079336.7-201ENST00000623428 1078 ntBASIC16■□□□□ 0.15
VCPP55072 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16■□□□□ 0.15
VCPP55072 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16■□□□□ 0.15
VCPP55072 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms