Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 AC104457.1-201ENST00000401024 814 ntBASIC14.1□□□□□ -0.15
RFX3P48380 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.1□□□□□ -0.15
RFX3P48380 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 AP006294.1-201ENST00000415407 339 ntBASIC14.1□□□□□ -0.15
RFX3P48380 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 AL162726.2-201ENST00000438986 1017 ntBASIC14.1□□□□□ -0.15
RFX3P48380 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.1□□□□□ -0.15
RFX3P48380 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.1□□□□□ -0.15
RFX3P48380 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.1□□□□□ -0.15
RFX3P48380 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.1□□□□□ -0.15
RFX3P48380 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 AC027307.3-201ENST00000594262 1100 ntBASIC14.1□□□□□ -0.15
RFX3P48380 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.1□□□□□ -0.15
RFX3P48380 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.1□□□□□ -0.15
RFX3P48380 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
RFX3P48380 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFX3P48380 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RFX3P48380 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.09□□□□□ -0.15
RFX3P48380 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 AC018529.2-202ENST00000611482 3087 ntBASIC14.09□□□□□ -0.15
RFX3P48380 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RFX3P48380 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.09□□□□□ -0.15
RFX3P48380 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.09□□□□□ -0.15
RFX3P48380 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.09□□□□□ -0.15
RFX3P48380 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RFX3P48380 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 CICP14-201ENST00000629111 2732 ntBASIC14.09□□□□□ -0.15
RFX3P48380 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 LRRC59-203ENST00000576448 1531 ntBASIC14.09□□□□□ -0.15
RFX3P48380 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.09□□□□□ -0.15
RFX3P48380 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.09□□□□□ -0.15
RFX3P48380 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFX3P48380 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms