Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SMARCA1P28370 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.97■□□□□ 0.31
SMARCA1P28370 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 AC004899.1-201ENST00000424687 1714 ntBASIC16.97■□□□□ 0.31
SMARCA1P28370 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SMARCA1P28370 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.97■□□□□ 0.31
SMARCA1P28370 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SMARCA1P28370 VDAC1P1-201ENST00000439229 848 ntBASIC16.97■□□□□ 0.31
SMARCA1P28370 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.97■□□□□ 0.31
SMARCA1P28370 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.97■□□□□ 0.31
SMARCA1P28370 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
SMARCA1P28370 SORD2P-201ENST00000558556 1069 ntBASIC16.97■□□□□ 0.31
SMARCA1P28370 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.97■□□□□ 0.31
SMARCA1P28370 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
SMARCA1P28370 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SMARCA1P28370 AC068587.8-201ENST00000641239 219 ntBASIC16.97■□□□□ 0.31
SMARCA1P28370 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SMARCA1P28370 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 AC068418.2-201ENST00000577309 3703 ntBASIC16.97■□□□□ 0.31
SMARCA1P28370 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMARCA1P28370 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 AC015802.1-201ENST00000588104 1449 ntBASIC16.96■□□□□ 0.31
SMARCA1P28370 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.96■□□□□ 0.31
SMARCA1P28370 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SMARCA1P28370 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.96■□□□□ 0.31
SMARCA1P28370 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.96■□□□□ 0.31
SMARCA1P28370 RNMTL1P1-201ENST00000454103 560 ntBASIC16.96■□□□□ 0.31
SMARCA1P28370 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SMARCA1P28370 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 RPL18P13-201ENST00000478088 569 ntBASIC16.96■□□□□ 0.31
SMARCA1P28370 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.96■□□□□ 0.31
SMARCA1P28370 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.96■□□□□ 0.31
SMARCA1P28370 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.96■□□□□ 0.31
SMARCA1P28370 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.96■□□□□ 0.31
SMARCA1P28370 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SMARCA1P28370 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
SMARCA1P28370 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMARCA1P28370 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
SMARCA1P28370 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.96■□□□□ 0.3
SMARCA1P28370 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SMARCA1P28370 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMARCA1P28370 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.3
SMARCA1P28370 AC215219.1-201ENST00000400706 1817 ntBASIC16.96■□□□□ 0.3
SMARCA1P28370 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.96■□□□□ 0.3
SMARCA1P28370 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMARCA1P28370 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC232323.1-201ENST00000540724 2099 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC144522.1-201ENST00000625111 1658 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC140479.7-201ENST00000636301 2332 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 FAM90A7P-201ENST00000382628 1395 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 FAM90A23P-201ENST00000400136 1395 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 AC020907.1-201ENST00000616460 1350 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.95■□□□□ 0.3
SMARCA1P28370 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms