Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL3A1P02461 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC19.25■□□□□ 0.67
COL3A1P02461 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 AL353637.1-201ENST00000451571 732 ntBASIC19.25■□□□□ 0.67
COL3A1P02461 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.25■□□□□ 0.67
COL3A1P02461 SUPT4H1P2-201ENST00000501248 353 ntBASIC19.25■□□□□ 0.67
COL3A1P02461 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC19.25■□□□□ 0.67
COL3A1P02461 AC084346.2-201ENST00000607097 949 ntBASIC19.25■□□□□ 0.67
COL3A1P02461 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 FAM45BP-202ENST00000592932 1624 ntBASIC19.25■□□□□ 0.67
COL3A1P02461 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL3A1P02461 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.25■□□□□ 0.67
COL3A1P02461 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL3A1P02461 AC005912.2-201ENST00000619492 2400 ntBASIC19.24■□□□□ 0.67
COL3A1P02461 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL3A1P02461 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.24■□□□□ 0.67
COL3A1P02461 OR8T1P-201ENST00000421347 918 ntBASIC19.24■□□□□ 0.67
COL3A1P02461 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19.24■□□□□ 0.67
COL3A1P02461 RN7SL67P-201ENST00000492147 296 ntBASIC19.24■□□□□ 0.67
COL3A1P02461 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.24■□□□□ 0.67
COL3A1P02461 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.24■□□□□ 0.67
COL3A1P02461 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC19.24■□□□□ 0.67
COL3A1P02461 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
COL3A1P02461 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
COL3A1P02461 CCT8L1P-201ENST00000465400 1674 ntBASIC19.24■□□□□ 0.67
COL3A1P02461 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL3A1P02461 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL3A1P02461 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL3A1P02461 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 MIR557-201ENST00000385239 98 ntBASIC19.23■□□□□ 0.67
COL3A1P02461 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.23■□□□□ 0.67
COL3A1P02461 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC19.23■□□□□ 0.67
COL3A1P02461 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.23■□□□□ 0.67
COL3A1P02461 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.23■□□□□ 0.67
COL3A1P02461 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.23■□□□□ 0.67
COL3A1P02461 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 AC009145.4-201ENST00000625119 1294 ntBASIC19.23■□□□□ 0.67
COL3A1P02461 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC19.23■□□□□ 0.67
COL3A1P02461 AC020910.6-201ENST00000623084 1459 ntBASIC19.23■□□□□ 0.67
COL3A1P02461 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL3A1P02461 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC19.22■□□□□ 0.67
COL3A1P02461 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 AC234782.1-201ENST00000451950 919 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL3A1P02461 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 AL596257.1-201ENST00000641463 2694 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 BRD7P5-201ENST00000299197 1822 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms