Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA1Q9Y5H4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA1Q9Y5H4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
PCDHGA1Q9Y5H4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 RARRES2P11-201ENST00000635158 484 ntBASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
PCDHGA1Q9Y5H4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHGA1Q9Y5H4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 AL022069.1-201ENST00000568025 1636 ntBASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PCDHGA1Q9Y5H4 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 AC090192.1-201ENST00000517740 490 ntBASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHGA1Q9Y5H4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 AC009086.3-201ENST00000623486 1008 ntBASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHGA1Q9Y5H4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 MIR3181-201ENST00000578512 73 ntBASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHGA1Q9Y5H4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.11
PCDHGA1Q9Y5H4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.02■■□□□ 1.11
PCDHGA1Q9Y5H4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 YBX1P1-201ENST00000445822 960 ntBASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 AC022517.1-201ENST00000592429 346 ntBASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHGA1Q9Y5H4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms