Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
SHROOM3Q8TF72 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
SHROOM3Q8TF72 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 MIR4787-201ENST00000607364 84 ntBASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SHROOM3Q8TF72 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
SHROOM3Q8TF72 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 AC021242.3-201ENST00000607598 1377 ntBASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 AC008406.3-201ENST00000620001 1374 ntBASIC23.41■■□□□ 1.34
SHROOM3Q8TF72 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 AL356441.2-201ENST00000443009 864 ntBASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 KRT125P-201ENST00000546827 989 ntBASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
SHROOM3Q8TF72 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.39■■□□□ 1.34
SHROOM3Q8TF72 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.39■■□□□ 1.34
SHROOM3Q8TF72 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
SHROOM3Q8TF72 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SHROOM3Q8TF72 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHROOM3Q8TF72 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 AC239859.2-201ENST00000444165 318 ntBASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHROOM3Q8TF72 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.36■■□□□ 1.33
SHROOM3Q8TF72 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.36■■□□□ 1.33
SHROOM3Q8TF72 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SHROOM3Q8TF72 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHROOM3Q8TF72 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SHROOM3Q8TF72 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.35■■□□□ 1.33
SHROOM3Q8TF72 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
SHROOM3Q8TF72 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms