Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 AC009299.2-201ENST00000482477 511 ntBASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM40Q6P9F5 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRIM40Q6P9F5 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 Z92544.1-202ENST00000571933 1220 ntBASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
TRIM40Q6P9F5 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 AC004812.2-201ENST00000611079 2094 ntBASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 KRT125P-201ENST00000546827 989 ntBASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM40Q6P9F5 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 AC021242.3-201ENST00000607598 1377 ntBASIC21.87■■□□□ 1.09
TRIM40Q6P9F5 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM40Q6P9F5 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM40Q6P9F5 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 AC004448.1-201ENST00000458332 883 ntBASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRIM40Q6P9F5 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TRIM40Q6P9F5 AC239859.2-201ENST00000444165 318 ntBASIC21.83■■□□□ 1.09
TRIM40Q6P9F5 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
TRIM40Q6P9F5 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM40Q6P9F5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.83■■□□□ 1.08
TRIM40Q6P9F5 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.82■■□□□ 1.08
TRIM40Q6P9F5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM40Q6P9F5 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms