Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
KRT40Q6A162 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.53■■□□□ 1.84
KRT40Q6A162 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
KRT40Q6A162 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 AL022069.1-201ENST00000568025 1636 ntBASIC26.53■■□□□ 1.84
KRT40Q6A162 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
KRT40Q6A162 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
KRT40Q6A162 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.52■■□□□ 1.84
KRT40Q6A162 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.84
KRT40Q6A162 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
KRT40Q6A162 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.51■■□□□ 1.83
KRT40Q6A162 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
KRT40Q6A162 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
KRT40Q6A162 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.51■■□□□ 1.83
KRT40Q6A162 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
KRT40Q6A162 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
KRT40Q6A162 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
KRT40Q6A162 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
KRT40Q6A162 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.5■■□□□ 1.83
KRT40Q6A162 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.5■■□□□ 1.83
KRT40Q6A162 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.5■■□□□ 1.83
KRT40Q6A162 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
KRT40Q6A162 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT40Q6A162 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.49■■□□□ 1.83
KRT40Q6A162 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT40Q6A162 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
KRT40Q6A162 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.49■■□□□ 1.83
KRT40Q6A162 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT40Q6A162 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
KRT40Q6A162 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
KRT40Q6A162 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
KRT40Q6A162 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC26.48■■□□□ 1.83
KRT40Q6A162 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
KRT40Q6A162 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.48■■□□□ 1.83
KRT40Q6A162 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.48■■□□□ 1.83
KRT40Q6A162 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
KRT40Q6A162 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT40Q6A162 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC26.47■■□□□ 1.83
KRT40Q6A162 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT40Q6A162 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT40Q6A162 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
KRT40Q6A162 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.47■■□□□ 1.83
KRT40Q6A162 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.47■■□□□ 1.83
KRT40Q6A162 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
KRT40Q6A162 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.47■■□□□ 1.83
KRT40Q6A162 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
KRT40Q6A162 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.47■■□□□ 1.83
KRT40Q6A162 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
KRT40Q6A162 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
KRT40Q6A162 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
KRT40Q6A162 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.46■■□□□ 1.83
KRT40Q6A162 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.46■■□□□ 1.83
KRT40Q6A162 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.46■■□□□ 1.83
KRT40Q6A162 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
KRT40Q6A162 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
KRT40Q6A162 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
KRT40Q6A162 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.45■■□□□ 1.82
KRT40Q6A162 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.45■■□□□ 1.82
KRT40Q6A162 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
KRT40Q6A162 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
KRT40Q6A162 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
KRT40Q6A162 PEMT-206ENST00000435340 960 ntTSL 5 BASIC26.44■■□□□ 1.82
KRT40Q6A162 STK32C-205ENST00000456004 607 ntTSL 2 BASIC26.44■■□□□ 1.82
KRT40Q6A162 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC26.44■■□□□ 1.82
KRT40Q6A162 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.44■■□□□ 1.82
KRT40Q6A162 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
KRT40Q6A162 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
KRT40Q6A162 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
KRT40Q6A162 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
KRT40Q6A162 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.43■■□□□ 1.82
KRT40Q6A162 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.42■■□□□ 1.82
KRT40Q6A162 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.42■■□□□ 1.82
KRT40Q6A162 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.42■■□□□ 1.82
KRT40Q6A162 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
KRT40Q6A162 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.41■■□□□ 1.82
KRT40Q6A162 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
KRT40Q6A162 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms