Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC58Q4VC31 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 AC007029.1-201ENST00000604183 313 ntBASIC20.31■□□□□ 0.84
CCDC58Q4VC31 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCDC58Q4VC31 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 RAP2CP1-202ENST00000605179 643 ntBASIC20.3■□□□□ 0.84
CCDC58Q4VC31 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC58Q4VC31 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 AL117328.2-201ENST00000624617 1940 ntBASIC20.29■□□□□ 0.84
CCDC58Q4VC31 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC58Q4VC31 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC58Q4VC31 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 AL161729.1-201ENST00000604104 1402 ntBASIC20.27■□□□□ 0.84
CCDC58Q4VC31 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 AC026202.3-201ENST00000600805 1127 ntBASIC20.27■□□□□ 0.84
CCDC58Q4VC31 AC022413.1-201ENST00000624602 984 ntBASIC20.27■□□□□ 0.84
CCDC58Q4VC31 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CCDC58Q4VC31 C1orf229-201ENST00000623686 2258 ntBASIC20.27■□□□□ 0.83
CCDC58Q4VC31 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC58Q4VC31 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC58Q4VC31 LINC00565-201ENST00000562710 2331 ntBASIC20.25■□□□□ 0.83
CCDC58Q4VC31 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms