Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.44■■□□□ 1.02
SOX3P41225 MIR6089-201ENST00000616698 64 ntBASIC21.44■■□□□ 1.02
SOX3P41225 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SOX3P41225 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SOX3P41225 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SOX3P41225 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SOX3P41225 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SOX3P41225 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
SOX3P41225 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.43■■□□□ 1.02
SOX3P41225 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.43■■□□□ 1.02
SOX3P41225 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
SOX3P41225 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SOX3P41225 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
SOX3P41225 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SOX3P41225 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SOX3P41225 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SOX3P41225 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.42■■□□□ 1.02
SOX3P41225 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.42■■□□□ 1.02
SOX3P41225 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SOX3P41225 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SOX3P41225 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.42■■□□□ 1.02
SOX3P41225 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SOX3P41225 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SOX3P41225 AC068473.5-201ENST00000616428 2072 ntBASIC21.42■■□□□ 1.02
SOX3P41225 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
SOX3P41225 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
SOX3P41225 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.41■■□□□ 1.02
SOX3P41225 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.41■■□□□ 1.02
SOX3P41225 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SOX3P41225 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SOX3P41225 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.4■■□□□ 1.02
SOX3P41225 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SOX3P41225 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
SOX3P41225 KRT16P3-201ENST00000439127 1283 ntBASIC21.4■■□□□ 1.02
SOX3P41225 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.4■■□□□ 1.02
SOX3P41225 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.4■■□□□ 1.02
SOX3P41225 AC131212.1-201ENST00000613771 668 ntBASIC21.4■■□□□ 1.02
SOX3P41225 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SOX3P41225 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SOX3P41225 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SOX3P41225 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SOX3P41225 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
SOX3P41225 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.39■■□□□ 1.02
SOX3P41225 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SOX3P41225 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.39■■□□□ 1.01
SOX3P41225 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.39■■□□□ 1.01
SOX3P41225 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.39■■□□□ 1.01
SOX3P41225 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SOX3P41225 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SOX3P41225 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SOX3P41225 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SOX3P41225 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.38■■□□□ 1.01
SOX3P41225 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SOX3P41225 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.38■■□□□ 1.01
SOX3P41225 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SOX3P41225 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.38■■□□□ 1.01
SOX3P41225 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.38■■□□□ 1.01
SOX3P41225 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SOX3P41225 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.38■■□□□ 1.01
SOX3P41225 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SOX3P41225 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SOX3P41225 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.37■■□□□ 1.01
SOX3P41225 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SOX3P41225 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
SOX3P41225 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.37■■□□□ 1.01
SOX3P41225 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.37■■□□□ 1.01
SOX3P41225 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.37■■□□□ 1.01
SOX3P41225 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SOX3P41225 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.36■■□□□ 1.01
SOX3P41225 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SOX3P41225 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.36■■□□□ 1.01
SOX3P41225 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.36■■□□□ 1.01
SOX3P41225 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
SOX3P41225 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX3P41225 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SOX3P41225 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms