Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
RFC4P35249 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC29.13■■■□□ 2.25
RFC4P35249 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.13■■■□□ 2.25
RFC4P35249 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
RFC4P35249 IKBKGP1-201ENST00000612193 1073 ntBASIC29.13■■■□□ 2.25
RFC4P35249 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.13■■■□□ 2.25
RFC4P35249 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
RFC4P35249 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.13■■■□□ 2.25
RFC4P35249 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.12■■■□□ 2.25
RFC4P35249 AC022517.1-201ENST00000592429 346 ntBASIC29.12■■■□□ 2.25
RFC4P35249 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC29.12■■■□□ 2.25
RFC4P35249 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.12■■■□□ 2.25
RFC4P35249 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.11■■■□□ 2.25
RFC4P35249 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.11■■■□□ 2.25
RFC4P35249 MIR3181-201ENST00000578512 73 ntBASIC29.11■■■□□ 2.25
RFC4P35249 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC29.11■■■□□ 2.25
RFC4P35249 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC29.11■■■□□ 2.25
RFC4P35249 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RFC4P35249 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
RFC4P35249 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.11■■■□□ 2.25
RFC4P35249 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC29.1■■■□□ 2.25
RFC4P35249 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RFC4P35249 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.1■■■□□ 2.25
RFC4P35249 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.1■■■□□ 2.25
RFC4P35249 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RFC4P35249 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.09■■■□□ 2.25
RFC4P35249 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.09■■■□□ 2.25
RFC4P35249 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.09■■■□□ 2.25
RFC4P35249 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.09■■■□□ 2.25
RFC4P35249 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.09■■■□□ 2.25
RFC4P35249 AC009086.3-201ENST00000623486 1008 ntBASIC29.09■■■□□ 2.25
RFC4P35249 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC29.09■■■□□ 2.25
RFC4P35249 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RFC4P35249 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
RFC4P35249 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC29.08■■■□□ 2.25
RFC4P35249 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.08■■■□□ 2.25
RFC4P35249 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RFC4P35249 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RFC4P35249 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.08■■■□□ 2.25
RFC4P35249 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.08■■■□□ 2.25
RFC4P35249 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RFC4P35249 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.08■■■□□ 2.25
RFC4P35249 AL022069.1-201ENST00000568025 1636 ntBASIC29.08■■■□□ 2.25
RFC4P35249 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.08■■■□□ 2.25
RFC4P35249 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
RFC4P35249 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RFC4P35249 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RFC4P35249 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.07■■■□□ 2.24
RFC4P35249 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RFC4P35249 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.07■■■□□ 2.24
RFC4P35249 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.07■■■□□ 2.24
RFC4P35249 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.07■■■□□ 2.24
RFC4P35249 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
RFC4P35249 HACD1-201ENST00000326961 773 ntTSL 2 BASIC29.06■■■□□ 2.24
RFC4P35249 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
RFC4P35249 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC29.06■■■□□ 2.24
RFC4P35249 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.06■■■□□ 2.24
RFC4P35249 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
RFC4P35249 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
RFC4P35249 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
RFC4P35249 AL137784.2-201ENST00000607332 1000 ntBASIC29.05■■■□□ 2.24
RFC4P35249 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
RFC4P35249 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
RFC4P35249 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
RFC4P35249 KRT18P5-201ENST00000436075 1291 ntBASIC29.04■■■□□ 2.24
RFC4P35249 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.04■■■□□ 2.24
RFC4P35249 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.04■■■□□ 2.24
RFC4P35249 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
RFC4P35249 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.04■■■□□ 2.24
RFC4P35249 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
RFC4P35249 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.03■■■□□ 2.24
RFC4P35249 YBX1P1-201ENST00000445822 960 ntBASIC29.03■■■□□ 2.24
RFC4P35249 AC126544.1-201ENST00000580842 1059 ntBASIC29.03■■■□□ 2.24
RFC4P35249 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.03■■■□□ 2.24
RFC4P35249 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.02■■■□□ 2.24
RFC4P35249 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.02■■■□□ 2.24
RFC4P35249 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
RFC4P35249 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.02■■■□□ 2.24
RFC4P35249 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.02■■■□□ 2.24
RFC4P35249 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.02■■■□□ 2.24
RFC4P35249 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.02■■■□□ 2.24
RFC4P35249 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
RFC4P35249 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
RFC4P35249 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.02■■■□□ 2.24
RFC4P35249 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
RFC4P35249 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
RFC4P35249 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.01■■■□□ 2.23
RFC4P35249 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.01■■■□□ 2.23
RFC4P35249 AL031602.1-201ENST00000633169 911 ntBASIC29.01■■■□□ 2.23
RFC4P35249 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.01■■■□□ 2.23
RFC4P35249 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RFC4P35249 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.01■■■□□ 2.23
RFC4P35249 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RFC4P35249 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
RFC4P35249 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
RFC4P35249 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC28.99■■■□□ 2.23
RFC4P35249 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.99■■■□□ 2.23
RFC4P35249 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
RFC4P35249 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.99■■■□□ 2.23
RFC4P35249 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms