Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.95■■□□□ 1.1
LDLRP01130 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.95■■□□□ 1.1
LDLRP01130 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDLRP01130 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.95■■□□□ 1.1
LDLRP01130 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDLRP01130 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LDLRP01130 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
LDLRP01130 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.94■■□□□ 1.1
LDLRP01130 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.94■■□□□ 1.1
LDLRP01130 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LDLRP01130 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
LDLRP01130 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 Z92544.1-202ENST00000571933 1220 ntBASIC21.93■■□□□ 1.1
LDLRP01130 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LDLRP01130 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.92■■□□□ 1.1
LDLRP01130 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
LDLRP01130 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
LDLRP01130 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LDLRP01130 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.92■■□□□ 1.1
LDLRP01130 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.92■■□□□ 1.1
LDLRP01130 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDLRP01130 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDLRP01130 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.91■■□□□ 1.1
LDLRP01130 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDLRP01130 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.91■■□□□ 1.1
LDLRP01130 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.91■■□□□ 1.1
LDLRP01130 C9orf163-202ENST00000624034 2573 ntBASIC21.91■■□□□ 1.1
LDLRP01130 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDLRP01130 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.91■■□□□ 1.1
LDLRP01130 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.91■■□□□ 1.1
LDLRP01130 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LDLRP01130 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.91■■□□□ 1.1
LDLRP01130 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.91■■□□□ 1.1
LDLRP01130 CLDN5-201ENST00000403084 2357 ntBASIC21.91■■□□□ 1.1
LDLRP01130 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.9■■□□□ 1.1
LDLRP01130 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LDLRP01130 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.9■■□□□ 1.1
LDLRP01130 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.9■■□□□ 1.1
LDLRP01130 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.9■■□□□ 1.1
LDLRP01130 AC019171.1-201ENST00000601251 1056 ntBASIC21.9■■□□□ 1.1
LDLRP01130 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
LDLRP01130 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
LDLRP01130 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LDLRP01130 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
LDLRP01130 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.89■■□□□ 1.09
LDLRP01130 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
LDLRP01130 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
LDLRP01130 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LDLRP01130 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDLRP01130 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDLRP01130 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.88■■□□□ 1.09
LDLRP01130 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.88■■□□□ 1.09
LDLRP01130 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDLRP01130 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LDLRP01130 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LDLRP01130 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LDLRP01130 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
LDLRP01130 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
LDLRP01130 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
LDLRP01130 MIR6089-201ENST00000616698 64 ntBASIC21.87■■□□□ 1.09
LDLRP01130 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
LDLRP01130 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.87■■□□□ 1.09
LDLRP01130 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LDLRP01130 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
LDLRP01130 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
LDLRP01130 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDLRP01130 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
LDLRP01130 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
LDLRP01130 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.86■■□□□ 1.09
LDLRP01130 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.86■■□□□ 1.09
LDLRP01130 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDLRP01130 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
LDLRP01130 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
LDLRP01130 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
LDLRP01130 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms