Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.19■□□□□ 0.98
NKX2-2O95096 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
NKX2-2O95096 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.19■□□□□ 0.98
NKX2-2O95096 BX664725.1-201ENST00000438252 379 ntBASIC21.19■□□□□ 0.98
NKX2-2O95096 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.19■□□□□ 0.98
NKX2-2O95096 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.19■□□□□ 0.98
NKX2-2O95096 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-2O95096 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NKX2-2O95096 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
NKX2-2O95096 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
NKX2-2O95096 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.18■□□□□ 0.98
NKX2-2O95096 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 SNX5-217ENST00000606557 1087 ntBASIC21.18■□□□□ 0.98
NKX2-2O95096 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NKX2-2O95096 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NKX2-2O95096 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NKX2-2O95096 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.17■□□□□ 0.98
NKX2-2O95096 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-2O95096 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.17■□□□□ 0.98
NKX2-2O95096 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.17■□□□□ 0.98
NKX2-2O95096 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.17■□□□□ 0.98
NKX2-2O95096 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NKX2-2O95096 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-2O95096 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-2O95096 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.17■□□□□ 0.98
NKX2-2O95096 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NKX2-2O95096 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-2O95096 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
NKX2-2O95096 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
NKX2-2O95096 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.16■□□□□ 0.98
NKX2-2O95096 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX2-2O95096 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-2O95096 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX2-2O95096 Z92544.1-202ENST00000571933 1220 ntBASIC21.16■□□□□ 0.98
NKX2-2O95096 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-2O95096 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NKX2-2O95096 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.16■□□□□ 0.98
NKX2-2O95096 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NKX2-2O95096 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.15■□□□□ 0.98
NKX2-2O95096 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 AL451085.2-201ENST00000605085 799 ntBASIC21.15■□□□□ 0.98
NKX2-2O95096 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.15■□□□□ 0.98
NKX2-2O95096 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.15■□□□□ 0.98
NKX2-2O95096 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NKX2-2O95096 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-2O95096 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NKX2-2O95096 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
NKX2-2O95096 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NKX2-2O95096 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-2O95096 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.14■□□□□ 0.97
NKX2-2O95096 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-2O95096 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.14■□□□□ 0.97
NKX2-2O95096 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-2O95096 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-2O95096 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NKX2-2O95096 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-2O95096 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-2O95096 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-2O95096 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-2O95096 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-2O95096 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.13■□□□□ 0.97
NKX2-2O95096 AC009299.2-201ENST00000482477 511 ntBASIC21.13■□□□□ 0.97
NKX2-2O95096 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.13■□□□□ 0.97
NKX2-2O95096 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-2O95096 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-2O95096 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-2O95096 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-2O95096 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-2O95096 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-2O95096 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-2O95096 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-2O95096 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX2-2O95096 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.12■□□□□ 0.97
NKX2-2O95096 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-2O95096 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX2-2O95096 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-2O95096 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.11■□□□□ 0.97
NKX2-2O95096 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.11■□□□□ 0.97
NKX2-2O95096 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-2O95096 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NKX2-2O95096 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
NKX2-2O95096 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-2O95096 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NKX2-2O95096 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.1■□□□□ 0.97
NKX2-2O95096 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-2O95096 KRT125P-201ENST00000546827 989 ntBASIC21.1■□□□□ 0.97
NKX2-2O95096 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms