Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC006001.1-201ENST00000325130 474 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 RN7SKP230-201ENST00000365642 335 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 BOLA2P3-201ENST00000404566 256 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC007969.1-201ENST00000433675 447 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AL590640.2-201ENST00000457038 527 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 FTLP10-202ENST00000505798 471 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC078819.1-201ENST00000547454 765 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC012085.1-201ENST00000548270 765 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC138696.2-201ENST00000607376 223 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 MIR6775-201ENST00000617557 69 ntBASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
KCMF1Q9P0J7 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 INE2-201ENST00000630399 1874 ntBASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 RPL7P3-201ENST00000441388 714 ntBASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 SNX29P1-201ENST00000548357 1007 ntBASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 AC006453.4-201ENST00000636949 1252 ntBASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
KCMF1Q9P0J7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms