Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AL512384.1-201ENST00000406683 331 ntBASIC15.92■□□□□ 0.14
SIX2Q9NPC8 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AC011495.1-201ENST00000498085 584 ntBASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 OR10B1P-201ENST00000601666 907 ntBASIC15.92■□□□□ 0.14
SIX2Q9NPC8 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SIX2Q9NPC8 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 MST1P2-201ENST00000457982 2291 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 COX5BP8-201ENST00000416911 349 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 CNN2P8-201ENST00000421872 913 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 TTTY23B-201ENST00000442790 549 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AC078819.1-201ENST00000547454 765 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AC012085.1-201ENST00000548270 765 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 SORD2P-201ENST00000558556 1069 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 BTNL10-201ENST00000595971 695 ntBASIC15.91■□□□□ 0.14
SIX2Q9NPC8 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SIX2Q9NPC8 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 KRT8P28-201ENST00000433288 1390 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SIX2Q9NPC8 HSPA8P5-201ENST00000456928 2069 ntBASIC15.9■□□□□ 0.14
SIX2Q9NPC8 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms