Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 RPL7P3-201ENST00000441388 714 ntBASIC15.44■□□□□ 0.06
NEK3P51956 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.44■□□□□ 0.06
NEK3P51956 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.44■□□□□ 0.06
NEK3P51956 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
NEK3P51956 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NEK3P51956 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.43■□□□□ 0.06
NEK3P51956 RNU1-114P-201ENST00000365297 166 ntBASIC15.43■□□□□ 0.06
NEK3P51956 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.43■□□□□ 0.06
NEK3P51956 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AL645937.2-201ENST00000396808 931 ntBASIC15.43■□□□□ 0.06
NEK3P51956 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 AC114812.1-204ENST00000449669 728 ntBASIC15.43■□□□□ 0.06
NEK3P51956 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.43■□□□□ 0.06
NEK3P51956 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.43■□□□□ 0.06
NEK3P51956 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AP000812.2-201ENST00000538934 718 ntBASIC15.43■□□□□ 0.06
NEK3P51956 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 GNRHR2-203ENST00000581100 1187 ntBASIC15.43■□□□□ 0.06
NEK3P51956 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.43■□□□□ 0.06
NEK3P51956 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 LINC01230-201ENST00000625222 3017 ntBASIC15.43■□□□□ 0.06
NEK3P51956 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NEK3P51956 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.43■□□□□ 0.06
NEK3P51956 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.43■□□□□ 0.06
NEK3P51956 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NEK3P51956 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NEK3P51956 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NEK3P51956 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
NEK3P51956 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
NEK3P51956 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
NEK3P51956 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.42■□□□□ 0.06
NEK3P51956 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 AC007787.1-201ENST00000588095 1583 ntBASIC15.42■□□□□ 0.06
NEK3P51956 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.42■□□□□ 0.06
NEK3P51956 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms