Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC138951.2-201ENST00000623455 1161 ntBASIC14.9□□□□□ -0.02
MSH3P20585 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 PDIA3P1-201ENST00000471856 1510 ntBASIC14.9□□□□□ -0.02
MSH3P20585 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 LINC00552-201ENST00000625151 2579 ntBASIC14.89□□□□□ -0.03
MSH3P20585 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
MSH3P20585 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
MSH3P20585 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 AL590640.2-201ENST00000457038 527 ntBASIC14.89□□□□□ -0.03
MSH3P20585 ACA64.2-201ENST00000459014 129 ntBASIC14.89□□□□□ -0.03
MSH3P20585 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.89□□□□□ -0.03
MSH3P20585 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 AC004466.1-201ENST00000599515 1080 ntBASIC14.89□□□□□ -0.03
MSH3P20585 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MSH3P20585 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.89□□□□□ -0.03
MSH3P20585 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSH3P20585 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.88□□□□□ -0.03
MSH3P20585 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
MSH3P20585 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.88□□□□□ -0.03
MSH3P20585 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.88□□□□□ -0.03
MSH3P20585 AC079776.1-201ENST00000401540 1152 ntBASIC14.88□□□□□ -0.03
MSH3P20585 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.88□□□□□ -0.03
MSH3P20585 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
MSH3P20585 POM121L8P-201ENST00000417732 1281 ntBASIC14.88□□□□□ -0.03
MSH3P20585 CNN2P8-201ENST00000421872 913 ntBASIC14.88□□□□□ -0.03
MSH3P20585 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 RPL7P3-201ENST00000441388 714 ntBASIC14.88□□□□□ -0.03
MSH3P20585 POM121L9P-203ENST00000441984 1285 ntBASIC14.88□□□□□ -0.03
MSH3P20585 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSH3P20585 CTBP2P5-201ENST00000454986 1264 ntBASIC14.88□□□□□ -0.03
MSH3P20585 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.88□□□□□ -0.03
MSH3P20585 AC104989.1-201ENST00000519711 778 ntBASIC14.88□□□□□ -0.03
MSH3P20585 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms