Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 AC087481.3-201ENST00000602886 1894 ntBASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CSB-PGBD3P0DP91 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 KRT18P36-201ENST00000411618 1276 ntBASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 AL391005.1-201ENST00000623953 2435 ntBASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CSB-PGBD3P0DP91 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSB-PGBD3P0DP91 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.55■□□□□ 0.72
CSB-PGBD3P0DP91 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms