Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC19.28■□□□□ 0.68
COL3A1P02461 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC19.28■□□□□ 0.68
COL3A1P02461 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL3A1P02461 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC19.28■□□□□ 0.68
COL3A1P02461 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.28■□□□□ 0.68
COL3A1P02461 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.28■□□□□ 0.68
COL3A1P02461 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.28■□□□□ 0.68
COL3A1P02461 UPF3AP2-201ENST00000457924 1132 ntBASIC19.28■□□□□ 0.68
COL3A1P02461 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.28■□□□□ 0.68
COL3A1P02461 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 AC012617.1-204ENST00000586340 2305 ntBASIC19.27■□□□□ 0.68
COL3A1P02461 KRT8P31-201ENST00000504812 1408 ntBASIC19.27■□□□□ 0.68
COL3A1P02461 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.27■□□□□ 0.68
COL3A1P02461 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.27■□□□□ 0.68
COL3A1P02461 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL3A1P02461 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.27■□□□□ 0.68
COL3A1P02461 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.27■□□□□ 0.68
COL3A1P02461 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.27■□□□□ 0.68
COL3A1P02461 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC19.27■□□□□ 0.68
COL3A1P02461 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL3A1P02461 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.27■□□□□ 0.67
COL3A1P02461 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.27■□□□□ 0.67
COL3A1P02461 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.27■□□□□ 0.67
COL3A1P02461 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.27■□□□□ 0.67
COL3A1P02461 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC19.27■□□□□ 0.67
COL3A1P02461 AC068587.10-201ENST00000641210 219 ntBASIC19.27■□□□□ 0.67
COL3A1P02461 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
COL3A1P02461 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL3A1P02461 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL3A1P02461 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC19.27■□□□□ 0.67
COL3A1P02461 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
COL3A1P02461 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 AC006335.1-201ENST00000445200 547 ntBASIC19.26■□□□□ 0.67
COL3A1P02461 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 AC134698.3-201ENST00000523880 214 ntBASIC19.26■□□□□ 0.67
COL3A1P02461 RTN3P1-201ENST00000536295 711 ntBASIC19.26■□□□□ 0.67
COL3A1P02461 CU633904.3-201ENST00000624042 1029 ntBASIC19.26■□□□□ 0.67
COL3A1P02461 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL3A1P02461 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL3A1P02461 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 CAP2P1-201ENST00000557743 1390 ntBASIC19.25■□□□□ 0.67
COL3A1P02461 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL3A1P02461 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC19.25■□□□□ 0.67
COL3A1P02461 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL3A1P02461 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL3A1P02461 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms