Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MAU2-208ENST00000587709 3751 ntTSL 210.42□□□□□ -0.745e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-215ENST00000479942 3559 ntTSL 1 (best)10.4□□□□□ -0.754e-7■■■■■ 86.2
SF3B1O75533 CRYZ-202ENST00000370870 888 ntTSL 510.36□□□□□ -0.753e-8■■■■■ 86.2
SF3B1O75533 CRYZ-206ENST00000441120 677 ntTSL 310.36□□□□□ -0.753e-8■■■■■ 86.2
SF3B1O75533 RPTOR-204ENST00000572733 424 ntTSL 310.34□□□□□ -0.754e-7■■■■■ 86.2
SF3B1O75533 XPO5-212ENST00000612911 911 ntTSL 210.3□□□□□ -0.764e-7■■■■■ 86.2
SF3B1O75533 PSMD2-209ENST00000460628 565 ntTSL 210.3□□□□□ -0.764e-7■■■■■ 86.2
SF3B1O75533 RFWD3-212ENST00000576652 528 ntTSL 410.29□□□□□ -0.764e-7■■■■■ 86.2
SF3B1O75533 NEDD8-206ENST00000531430 651 ntTSL 210.25□□□□□ -0.774e-7■■■■■ 86.2
SF3B1O75533 KDM2B-211ENST00000540191 574 ntTSL 410.22□□□□□ -0.774e-7■■■■■ 86.2
SF3B1O75533 RBM22-204ENST00000520132 2067 ntTSL 210.22□□□□□ -0.774e-7■■■■■ 86.2
SF3B1O75533 PSMD2-217ENST00000491149 895 ntTSL 210.21□□□□□ -0.784e-7■■■■■ 86.2
SF3B1O75533 TCF4-245ENST00000570177 1872 ntTSL 2 BASIC10.18□□□□□ -0.784e-7■■■■■ 86.2
SF3B1O75533 RHOT1-217ENST00000584852 421 ntTSL 510.14□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 PLA2G2C-203ENST00000495760 368 ntTSL 310.14□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 RHOT1-207ENST00000580392 650 ntTSL 310.14□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 AP4B1-213ENST00000489092 955 ntTSL 310.14□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 NUP93-217ENST00000568656 592 ntTSL 410.12□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 PREPL-202ENST00000378511 2315 ntTSL 1 (best) BASIC10.11□□□□□ -0.793e-8■■■■■ 86.2
SF3B1O75533 DOCK8-202ENST00000382331 1922 ntTSL 1 (best) BASIC10.1□□□□□ -0.794e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-204ENST00000392018 3313 ntTSL 5 BASIC10.05□□□□□ -0.84e-7■■■■■ 86.2
SF3B1O75533 USP11-201ENST00000218348 3338 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.84e-7■■■■■ 86.2
SF3B1O75533 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.88e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-206ENST00000392021 3301 ntTSL 1 (best)10.03□□□□□ -0.84e-7■■■■■ 86.2
SF3B1O75533 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 RFWD3-211ENST00000575397 841 ntTSL 210□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 RFWD3-206ENST00000572840 458 ntTSL 210□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 G3BP2-209ENST00000507701 678 ntTSL 29.99□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 PHACTR1-210ENST00000489548 568 ntTSL 59.99□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 ANKS3-208ENST00000586632 553 ntTSL 49.98□□□□□ -0.814e-7■■■■■ 86.2
SF3B1O75533 NUP93-212ENST00000566678 442 ntTSL 29.94□□□□□ -0.824e-7■■■■■ 86.2
SF3B1O75533 MACC1-203ENST00000471019 304 ntTSL 39.89□□□□□ -0.837e-6■■■■■ 86.2
SF3B1O75533 SSFA2-203ENST00000409136 3610 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.834e-7■■■■■ 86.2
SF3B1O75533 NLRP2-215ENST00000543277 707 ntTSL 39.88□□□□□ -0.836e-6■■■■■ 86.2
SF3B1O75533 TADA2A-214ENST00000620838 490 ntTSL 49.88□□□□□ -0.834e-7■■■■■ 86.2
SF3B1O75533 SNX1-202ENST00000380285 8119 ntTSL 1 (best)9.86□□□□□ -0.834e-7■■■■■ 86.2
SF3B1O75533 FTSJ3-201ENST00000427159 3559 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.844e-7■■■■■ 86.2
SF3B1O75533 EIF2B2-207ENST00000556668 1011 ntTSL 29.79□□□□□ -0.844e-7■■■■■ 86.2
SF3B1O75533 RPL4-210ENST00000566039 1099 ntTSL 29.78□□□□□ -0.844e-7■■■■■ 86.2
SF3B1O75533 AC099811.2-201ENST00000585562 646 ntTSL 39.74□□□□□ -0.854e-7■■■■■ 86.2
SF3B1O75533 CC2D2A-206ENST00000506643 3259 ntTSL 29.69□□□□□ -0.864e-7■■■■■ 86.2
SF3B1O75533 RUFY3-204ENST00000502653 2342 ntTSL 2 BASIC9.67□□□□□ -0.864e-7■■■■■ 86.2
SF3B1O75533 XPO5-203ENST00000398835 868 ntTSL 59.62□□□□□ -0.874e-7■■■■■ 86.2
SF3B1O75533 USP6NL-203ENST00000443016 2491 ntTSL 29.6□□□□□ -0.871e-6■■■■■ 86.2
SF3B1O75533 AC007375.2-201ENST00000557752 603 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.884e-7■■■■■ 86.2
SF3B1O75533 INO80-203ENST00000557849 599 ntTSL 59.56□□□□□ -0.884e-7■■■■■ 86.2
SF3B1O75533 CC2D2A-217ENST00000634028 4790 ntTSL 1 (best)9.54□□□□□ -0.884e-7■■■■■ 86.2
SF3B1O75533 UVRAG-202ENST00000525183 1325 ntTSL 29.54□□□□□ -0.884e-7■■■■■ 86.2
SF3B1O75533 ZNF841-204ENST00000594440 721 ntTSL 39.5□□□□□ -0.894e-7■■■■■ 86.2
SF3B1O75533 MPP1-213ENST00000482757 989 ntTSL 29.49□□□□□ -0.894e-7■■■■■ 86.2
SF3B1O75533 TPP2-204ENST00000482393 720 ntTSL 39.48□□□□□ -0.894e-7■■■■■ 86.2
SF3B1O75533 LINC02405-203ENST00000546062 563 ntTSL 39.44□□□□□ -0.94e-7■■■■■ 86.2
SF3B1O75533 PPAT-203ENST00000507648 928 ntTSL 59.44□□□□□ -0.95e-6■■■■■ 86.2
SF3B1O75533 TADA2A-202ENST00000612272 1948 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.94e-7■■■■■ 86.2
SF3B1O75533 HIKESHI-203ENST00000529405 1558 ntTSL 29.42□□□□□ -0.94e-7■■■■■ 86.2
SF3B1O75533 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.94e-7■■■■■ 86.2
SF3B1O75533 LRRFIP2-214ENST00000481682 561 ntTSL 49.4□□□□□ -0.94e-7■■■■■ 86.2
SF3B1O75533 SFSWAP-202ENST00000535202 567 ntTSL 29.38□□□□□ -0.914e-7■■■■■ 86.2
SF3B1O75533 KIAA0391-205ENST00000603544 2232 ntTSL 5 BASIC9.37□□□□□ -0.914e-7■■■■■ 86.2
SF3B1O75533 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC9.37□□□□□ -0.914e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC9.37□□□□□ -0.917e-7■■■■■ 86.2
SF3B1O75533 KIAA1524-201ENST00000295746 4075 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.914e-7■■■■■ 86.2
SF3B1O75533 HIKESHI-201ENST00000278483 1113 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.934e-7■■■■■ 86.2
SF3B1O75533 CTNNA1-203ENST00000517534 416 ntTSL 29.23□□□□□ -0.934e-7■■■■■ 86.2
SF3B1O75533 RAP1A-204ENST00000494982 1083 ntTSL 59.21□□□□□ -0.944e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-214ENST00000474148 4208 ntTSL 29.18□□□□□ -0.944e-7■■■■■ 86.2
SF3B1O75533 DPH3-204ENST00000488423 3131 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.948e-6■■■■■ 86.2
SF3B1O75533 NDUFB5-215ENST00000496904 175 ntTSL 59.13□□□□□ -0.957e-7■■■■■ 86.2
SF3B1O75533 RPLP0-207ENST00000547173 864 ntTSL 39.11□□□□□ -0.954e-7■■■■■ 86.2
SF3B1O75533 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.954e-7■■■■■ 86.2
SF3B1O75533 ZKSCAN3-202ENST00000341464 1794 ntTSL 2 BASIC9.09□□□□□ -0.954e-7■■■■■ 86.2
SF3B1O75533 CIPC-204ENST00000555200 581 ntTSL 39.08□□□□□ -0.964e-7■■■■■ 86.2
SF3B1O75533 NEDD8-MDP1-201ENST00000530579 471 ntTSL 29.06□□□□□ -0.964e-7■■■■■ 86.2
SF3B1O75533 SAMD7-203ENST00000487910 1607 ntTSL 1 (best)9.04□□□□□ -0.964e-7■■■■■ 86.2
SF3B1O75533 PREPL-208ENST00000410081 3080 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.963e-8■■■■■ 86.2
SF3B1O75533 PFKFB4-212ENST00000478516 579 ntTSL 39.04□□□□□ -0.964e-7■■■■■ 86.2
SF3B1O75533 DDX18-204ENST00000474694 1083 ntTSL 59.03□□□□□ -0.964e-7■■■■■ 86.2
SF3B1O75533 DPH3-202ENST00000383775 3052 ntTSL 2 BASIC8.99□□□□□ -0.978e-6■■■■■ 86.2
SF3B1O75533 ATG16L1-209ENST00000431917 589 ntTSL 58.97□□□□□ -0.974e-7■■■■■ 86.2
SF3B1O75533 PREPL-204ENST00000409272 3030 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.983e-8■■■■■ 86.2
SF3B1O75533 TADA2A-215ENST00000621780 598 ntTSL 38.86□□□□□ -0.994e-7■■■■■ 86.2
SF3B1O75533 BRPF3-212ENST00000534694 4628 ntTSL 5 BASIC8.85□□□□□ -0.994e-7■■■■■ 86.2
SF3B1O75533 TAF1B-205ENST00000434858 1592 ntTSL 28.83□□□□□ -14e-7■■■■■ 86.2
SF3B1O75533 SNUPN-208ENST00000567437 470 ntTSL 28.79□□□□□ -14e-7■■■■■ 86.2
SF3B1O75533 AMPD3-213ENST00000530864 717 ntTSL 58.76□□□□□ -1.014e-7■■■■■ 86.2
SF3B1O75533 NONO-204ENST00000413858 855 ntTSL 38.63□□□□□ -1.034e-7■■■■■ 86.2
SF3B1O75533 MINPP1-203ENST00000472891 734 ntTSL 38.49□□□□□ -1.054e-7■■■■■ 86.2
SF3B1O75533 AC087632.1-204ENST00000635160 692 ntTSL 48.44□□□□□ -1.064e-7■■■■■ 86.2
SF3B1O75533 SENP1-210ENST00000552189 4967 ntTSL 1 (best)8.42□□□□□ -1.064e-7■■■■■ 86.2
SF3B1O75533 ERC1-207ENST00000536573 1832 ntTSL 58.4□□□□□ -1.064e-7■■■■■ 86.2
SF3B1O75533 RGS5-210ENST00000531954 581 ntTSL 48.37□□□□□ -1.074e-7■■■■■ 86.2
SF3B1O75533 RPL4-203ENST00000561775 1396 ntTSL 58.28□□□□□ -1.084e-7■■■■■ 86.2
SF3B1O75533 CC2D2A-201ENST00000389652 4488 ntTSL 58.19□□□□□ -1.14e-7■■■■■ 86.2
SF3B1O75533 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.14e-7■■■■■ 86.2
SF3B1O75533 CNOT10-204ENST00000430408 687 ntTSL 38.16□□□□□ -1.13e-8■■■■■ 86.2
SF3B1O75533 LINC01481-202ENST00000549419 531 ntTSL 48.12□□□□□ -1.114e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-201ENST00000426083 1438 ntTSL 1 (best) BASIC8.1□□□□□ -1.114e-7■■■■■ 86.2
SF3B1O75533 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC8.08□□□□□ -1.123e-8■■■■■ 86.2
SF3B1O75533 AC087632.1-213ENST00000634538 924 ntTSL 58.03□□□□□ -1.124e-7■■■■■ 86.2
SF3B1O75533 AC087632.1-210ENST00000635593 668 ntTSL 58.03□□□□□ -1.124e-7■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1559.6 ms