RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 DCAF8L2P0C7V8 631 aa15.66■□□□□ 0.1
SNX1-202ENST00000380285 PELP1Q8IZL8 1130 aaKnown RBP15.52■□□□□ 0.07
SNX1-202ENST00000380285 NISCHQ9Y2I1 1504 aa15.45■□□□□ 0.06
SNX1-202ENST00000380285 SUPT5HO00267 1087 aaKnown RBP15.23■□□□□ 0.03
SNX1-202ENST00000380285 MYT1Q01538 1121 aa15□□□□□ -0.01
SNX1-202ENST00000380285 ZEB1P37275 1124 aaPredicted RBP14.88□□□□□ -0.03
SNX1-202ENST00000380285 APLP2Q06481 763 aa14.83□□□□□ -0.04
SNX1-202ENST00000380285 CENPBP07199 599 aaPredicted RBP14.82□□□□□ -0.04
SNX1-202ENST00000380285 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
SNX1-202ENST00000380285 CCER1Q8TC90 406 aaPredicted RBP14.77□□□□□ -0.05
SNX1-202ENST00000380285 ERICH6Q7L0X2 663 aa14.63□□□□□ -0.07
SNX1-202ENST00000380285 PCGF6Q9BYE7 350 aa14.6□□□□□ -0.07
SNX1-202ENST00000380285 FAM9AQ8IZU1 332 aaPredicted RBP14.54□□□□□ -0.08
SNX1-202ENST00000380285 EHMT2Q96KQ7 1210 aa14.47□□□□□ -0.09
SNX1-202ENST00000380285 NEFLP07196 543 aa14.39□□□□□ -0.11
SNX1-202ENST00000380285 TRIM41Q8WV44 630 aa14.28□□□□□ -0.12
SNX1-202ENST00000380285 TRIM26Q12899 539 aaPredicted RBP14.19□□□□□ -0.14
SNX1-202ENST00000380285 HRCP23327 699 aa14.13□□□□□ -0.15
SNX1-202ENST00000380285 TTBK1Q5TCY1 1321 aaPredicted RBP14.11□□□□□ -0.15
SNX1-202ENST00000380285 YTHDC1Q96MU7 727 aaKnown RBP14.09□□□□□ -0.15
SNX1-202ENST00000380285 UBTFP17480 764 aaKnown RBP14.06□□□□□ -0.16
SNX1-202ENST00000380285 DAXXQ9UER7 740 aaPredicted RBP13.97□□□□□ -0.17
SNX1-202ENST00000380285 ATP1B4Q9UN42 357 aaPredicted RBP13.89□□□□□ -0.19
SNX1-202ENST00000380285 RANGAP1P46060 587 aaPredicted RBP13.86□□□□□ -0.19
SNX1-202ENST00000380285 RTL5Q5HYW3 569 aaPredicted RBP13.76□□□□□ -0.21
SNX1-202ENST00000380285 DIEXFQ68CQ4 756 aaKnown RBP13.71□□□□□ -0.22
SNX1-202ENST00000380285 CHIC1Q5VXU3 224 aa13.7□□□□□ -0.22
SNX1-202ENST00000380285 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
SNX1-202ENST00000380285 PPARGC1BQ86YN6 1023 aaKnown RBP13.6□□□□□ -0.23
SNX1-202ENST00000380285 CLSPNQ9HAW4 1339 aa13.58□□□□□ -0.24
SNX1-202ENST00000380285 LOC105371045A0A1W2PR82 267 aa13.53□□□□□ -0.24
SNX1-202ENST00000380285 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
SNX1-202ENST00000380285 ITGAEP38570 1179 aa13.49□□□□□ -0.25
SNX1-202ENST00000380285 CDK11AQ9UQ88 783 aaPredicted RBP13.48□□□□□ -0.25
SNX1-202ENST00000380285 POLR3GLQ9BT43 218 aa13.46□□□□□ -0.25
SNX1-202ENST00000380285 GTF3C3Q9Y5Q9 886 aa13.45□□□□□ -0.26
SNX1-202ENST00000380285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
SNX1-202ENST00000380285 MYT1LQ9UL68 1186 aa13.42□□□□□ -0.26
SNX1-202ENST00000380285 ANP32CO43423 234 aa13.41□□□□□ -0.26
SNX1-202ENST00000380285 ACIN1Q9UKV3 1341 aaKnown RBP13.37□□□□□ -0.27
SNX1-202ENST00000380285 ANP32AP39687 249 aaKnown RBP13.29□□□□□ -0.28
SNX1-202ENST00000380285 DCAF1Q9Y4B6 1507 aa13.27□□□□□ -0.29
SNX1-202ENST00000380285 FAM50AQ14320 339 aaKnown RBP13.27□□□□□ -0.29
SNX1-202ENST00000380285 ZBTB47Q9UFB7 747 aaPredicted RBP13.24□□□□□ -0.29
SNX1-202ENST00000380285 TRIM52Q96A61 297 aa13.2□□□□□ -0.3
SNX1-202ENST00000380285 SLC4A1APQ9BWU0 796 aaKnown RBP13.19□□□□□ -0.3
SNX1-202ENST00000380285 BCANQ96GW7 911 aa13.18□□□□□ -0.3
SNX1-202ENST00000380285 GLIPR1L2Q4G1C9 344 aa13.18□□□□□ -0.3
SNX1-202ENST00000380285 NEUROD1Q13562 356 aa13.17□□□□□ -0.3
SNX1-202ENST00000380285 CNGB1Q14028 1251 aaPredicted RBP13.16□□□□□ -0.3
SNX1-202ENST00000380285 ANP32BQ92688 251 aaKnown RBP13.14□□□□□ -0.31
SNX1-202ENST00000380285 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
SNX1-202ENST00000380285 NEFMP07197 916 aa13.07□□□□□ -0.32
SNX1-202ENST00000380285 UPF2Q9HAU5 1272 aaKnown RBP13.04□□□□□ -0.32
SNX1-202ENST00000380285 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
SNX1-202ENST00000380285 FKBP8Q14318 412 aa12.99□□□□□ -0.33
SNX1-202ENST00000380285 TONSLQ96HA7 1378 aa12.98□□□□□ -0.33
SNX1-202ENST00000380285 ZNF326Q5BKZ1 582 aaKnown RBP12.96□□□□□ -0.33
SNX1-202ENST00000380285 CCDC180Q9P1Z9 1646 aa12.94□□□□□ -0.34
SNX1-202ENST00000380285 EIF5BO60841 1220 aaKnown RBP12.94□□□□□ -0.34
SNX1-202ENST00000380285 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.93□□□□□ -0.34
SNX1-202ENST00000380285 HSP90AA1P07900 732 aaKnown RBP12.92□□□□□ -0.34
SNX1-202ENST00000380285 NPM2Q86SE8 214 aaKnown RBP12.9□□□□□ -0.34
SNX1-202ENST00000380285 ANP32EQ9BTT0 268 aa12.9□□□□□ -0.34
SNX1-202ENST00000380285 HNRNPUQ00839 825 aaKnown RBP eCLIP12.89□□□□□ -0.35
SNX1-202ENST00000380285 SLC24A1O60721 1099 aa12.87□□□□□ -0.35
SNX1-202ENST00000380285 CCDC136Q96JN2 1154 aa12.86□□□□□ -0.35
SNX1-202ENST00000380285 DDRGK1Q96HY6 314 aa12.85□□□□□ -0.35
SNX1-202ENST00000380285 ZCCHC6Q5VYS8 1495 aaKnown RBP12.84□□□□□ -0.35
SNX1-202ENST00000380285 SCAF1Q9H7N4 1312 aaKnown RBP12.81□□□□□ -0.36
SNX1-202ENST00000380285 ABCC9O60706 1549 aa12.79□□□□□ -0.36
SNX1-202ENST00000380285 EEA1Q15075 1411 aa12.79□□□□□ -0.36
SNX1-202ENST00000380285 TMC1Q8TDI8 760 aa12.78□□□□□ -0.36
SNX1-202ENST00000380285 DDX10Q13206 875 aaKnown RBP12.78□□□□□ -0.36
SNX1-202ENST00000380285 BECN1Q14457 450 aa12.78□□□□□ -0.36
SNX1-202ENST00000380285 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
SNX1-202ENST00000380285 NBR1Q14596 966 aa12.73□□□□□ -0.37
SNX1-202ENST00000380285 SCRIBQ14160 1630 aa12.72□□□□□ -0.37
SNX1-202ENST00000380285 WDR43Q15061 677 aaKnown RBP eCLIP12.71□□□□□ -0.37
SNX1-202ENST00000380285 MRS2Q9HD23 443 aa12.71□□□□□ -0.38
SNX1-202ENST00000380285 PPM1GO15355 546 aaPredicted RBP12.7□□□□□ -0.38
SNX1-202ENST00000380285 TNNT2P45379 298 aaPredicted RBP12.69□□□□□ -0.38
SNX1-202ENST00000380285 TRIM44Q96DX7 344 aaPredicted RBP12.69□□□□□ -0.38
SNX1-202ENST00000380285 GOLGA6L22H0YM25 854 aa12.68□□□□□ -0.38
SNX1-202ENST00000380285 MIER1Q8N108 512 aa12.68□□□□□ -0.38
SNX1-202ENST00000380285 PABPN1Q86U42 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
SNX1-202ENST00000380285 ERICH6BQ5W0A0 696 aa12.68□□□□□ -0.38
SNX1-202ENST00000380285 MYH16Q9H6N6 1097 aa12.67□□□□□ -0.38
SNX1-202ENST00000380285 CLIP1P30622 1438 aa12.66□□□□□ -0.38
SNX1-202ENST00000380285 EIF4G2P78344 907 aaKnown RBP eCLIP12.66□□□□□ -0.38
SNX1-202ENST00000380285 GOLGA3Q08378 1498 aa12.65□□□□□ -0.38
SNX1-202ENST00000380285 P3H3Q8IVL6 736 aa12.64□□□□□ -0.39
SNX1-202ENST00000380285 ZNF777Q9ULD5 760 aaPredicted RBP12.63□□□□□ -0.39
SNX1-202ENST00000380285 BCL11AQ9H165 835 aa12.63□□□□□ -0.39
SNX1-202ENST00000380285 RSF1Q96T23 1441 aaPredicted RBP12.63□□□□□ -0.39
SNX1-202ENST00000380285 NCLP19338 710 aaKnown RBP12.62□□□□□ -0.39
SNX1-202ENST00000380285 MTUS2Q5JR59 1369 aa12.61□□□□□ -0.39
SNX1-202ENST00000380285 FBLN2P98095 1184 aa12.6□□□□□ -0.39
SNX1-202ENST00000380285 PPP4R2Q9NY27 417 aa12.57□□□□□ -0.4
SNX1-202ENST00000380285 CEP162Q5TB80 1403 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms