Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RHBDD3Q9Y3P4 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RHBDD3Q9Y3P4 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RHBDD3Q9Y3P4 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.16□□□□□ -0.3
RHBDD3Q9Y3P4 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RHBDD3Q9Y3P4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PEG13-201ENST00000631594 5667 ntBASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC026410.3-201ENST00000514280 936 ntBASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC107373.2-201ENST00000607735 490 ntBASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AL662799.1-202ENST00000614205 422 ntBASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AC092135.3-201ENST00000624151 1846 ntBASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RHBDD3Q9Y3P4 AL138799.1-201ENST00000448213 1675 ntBASIC13.15□□□□□ -0.31
RHBDD3Q9Y3P4 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RHBDD3Q9Y3P4 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
RHBDD3Q9Y3P4 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RHBDD3Q9Y3P4 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 AL360270.3-201ENST00000609118 1348 ntBASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 LINC01230-201ENST00000625222 3017 ntBASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RHBDD3Q9Y3P4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 322.6 ms