Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 API5-203ENST00000455725 2257 ntTSL 2 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 AC007292.2-201ENST00000593524 1812 ntBASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 CICP6-201ENST00000457191 2729 ntBASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM4Q9ULL8 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 AC084781.1-201ENST00000613737 656 ntBASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM4Q9ULL8 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 AL627422.1-201ENST00000434104 580 ntBASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 AC093752.3-201ENST00000567343 901 ntBASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 LINC01815-202ENST00000641468 1409 ntBASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 ACE3P-201ENST00000423435 1973 ntBASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SHROOM4Q9ULL8 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 SERF2-209ENST00000409646 559 ntTSL 4 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 AC008723.1-201ENST00000506922 207 ntBASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 MIR4522-201ENST00000584932 87 ntBASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC27.95■■■□□ 2.07
SHROOM4Q9ULL8 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 CICP12-201ENST00000455801 843 ntBASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 ALG3P1-201ENST00000508806 1114 ntBASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 SCARNA21-201ENST00000517026 139 ntBASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AC087392.5-201ENST00000612517 489 ntBASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 ETV2-207ENST00000619399 994 ntTSL 5 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM4Q9ULL8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC27.95■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms