Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.3□□□□□ -0.28
MMP28Q9H239 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 SPTSSB-204ENST00000617024 1292 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 AC105339.1-204ENST00000636249 355 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 AC055811.4-201ENST00000624039 1754 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
MMP28Q9H239 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AP000344.2-201ENST00000512987 629 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AP000842.3-202ENST00000569238 1080 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC022145.2-201ENST00000598203 171 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC027612.4-201ENST00000605371 583 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
MMP28Q9H239 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC138969.3-201ENST00000546612 1459 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 AC138932.2-201ENST00000548268 1459 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 AC126755.4-201ENST00000549796 1459 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.29□□□□□ -0.28
MMP28Q9H239 AC068760.1-201ENST00000493579 1953 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MMP28Q9H239 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
MMP28Q9H239 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 UXT-AS1-201ENST00000590504 1525 ntBASIC13.29□□□□□ -0.28
MMP28Q9H239 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 KRT8P24-201ENST00000560290 1559 ntBASIC13.28□□□□□ -0.28
MMP28Q9H239 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
MMP28Q9H239 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.28□□□□□ -0.28
MMP28Q9H239 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MMP28Q9H239 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
MMP28Q9H239 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms