Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL12A1Q99715 CICP23-201ENST00000605013 2741 ntBASIC12.71□□□□□ -0.37
COL12A1Q99715 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL12A1Q99715 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.37
COL12A1Q99715 TMBIM7P-202ENST00000641474 1516 ntBASIC12.71□□□□□ -0.38
COL12A1Q99715 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
COL12A1Q99715 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC12.71□□□□□ -0.38
COL12A1Q99715 RN7SL23P-201ENST00000484055 275 ntBASIC12.71□□□□□ -0.38
COL12A1Q99715 AC022447.5-201ENST00000504817 392 ntBASIC12.71□□□□□ -0.38
COL12A1Q99715 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL12A1Q99715 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.71□□□□□ -0.38
COL12A1Q99715 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
COL12A1Q99715 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 SNORA57-201ENST00000383870 149 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 IFNWP2-201ENST00000431203 580 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.7□□□□□ -0.38
COL12A1Q99715 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 RNASEH2CP1-201ENST00000454281 502 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 AP003040.1-201ENST00000532044 1024 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 RN7SL440P-201ENST00000577855 343 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 AL357143.1-203ENST00000639750 881 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL596087.1-201ENST00000400979 1969 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL12A1Q99715 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.7□□□□□ -0.38
COL12A1Q99715 CASP3-205ENST00000517513 964 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL12A1Q99715 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AC138761.6-201ENST00000583997 1423 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AC003102.2-201ENST00000589195 1469 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AP000845.1-201ENST00000581677 2131 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL591122.2-201ENST00000624125 1853 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC12.7□□□□□ -0.38
COL12A1Q99715 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC12.7□□□□□ -0.38
COL12A1Q99715 PFN2-212ENST00000490975 858 ntTSL 4 BASIC12.7□□□□□ -0.38
COL12A1Q99715 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC12.7□□□□□ -0.38
COL12A1Q99715 AC027601.3-201ENST00000622907 509 ntBASIC12.7□□□□□ -0.38
COL12A1Q99715 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.7□□□□□ -0.38
COL12A1Q99715 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL12A1Q99715 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC12.7□□□□□ -0.38
COL12A1Q99715 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL12A1Q99715 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 PIFO-201ENST00000369737 746 ntTSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 AL121949.1-201ENST00000402043 968 ntBASIC12.69□□□□□ -0.38
COL12A1Q99715 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC12.69□□□□□ -0.38
COL12A1Q99715 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
COL12A1Q99715 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC12.69□□□□□ -0.38
COL12A1Q99715 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms