Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC005695.3-201ENST00000614522 232 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AL023775.1-201ENST00000454907 1746 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AL591846.1-201ENST00000451736 433 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AC026434.2-201ENST00000506094 1078 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AL391280.1-201ENST00000506969 1062 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 RN7SL713P-201ENST00000582127 302 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 PPY2P-201ENST00000582808 702 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AL022328.3-201ENST00000607943 679 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AC012508.2-201ENST00000567613 1472 ntBASIC13.92□□□□□ -0.18
BEST3Q8N1M1 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
BEST3Q8N1M1 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 CLUHP2-201ENST00000426660 1303 ntBASIC13.91□□□□□ -0.18
BEST3Q8N1M1 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
BEST3Q8N1M1 SSR4P1-203ENST00000599569 2260 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms