Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AL157407.1-201ENST00000435784 904 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AL645933.1-201ENST00000440087 609 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 SNORD3B-2-202ENST00000571722 791 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 RN7SL774P-201ENST00000577467 290 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AC092135.3-201ENST00000624151 1846 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 AC018442.1-201ENST00000421439 2061 ntBASIC18.5■□□□□ 0.55
UBE3BQ7Z3V4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AC011742.3-201ENST00000439053 820 ntBASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AP001505.2-201ENST00000616815 443 ntBASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AC091544.8-201ENST00000619490 361 ntBASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 FAM90A7P-201ENST00000382628 1395 ntBASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 FAM90A23P-201ENST00000400136 1395 ntBASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.49■□□□□ 0.55
UBE3BQ7Z3V4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 MIR769-201ENST00000390225 118 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AL035414.1-201ENST00000451327 857 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 RN7SL11P-201ENST00000471305 293 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AC125604.1-201ENST00000496255 707 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 MIR3619-201ENST00000579667 83 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AC009884.2-201ENST00000603110 324 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AL136295.7-201ENST00000619226 1200 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 AC138627.1-207ENST00000641560 1006 ntBASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.48■□□□□ 0.55
UBE3BQ7Z3V4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms