Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 ACE3P-201ENST00000423435 1973 ntBASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 REXO1L2P-201ENST00000425429 2069 ntBASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
PDLIM3Q53GG5 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SPDYE17-201ENST00000412399 783 ntBASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AC093004.1-201ENST00000508850 424 ntBASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 AC004840.1-201ENST00000636359 365 ntBASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
PDLIM3Q53GG5 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms