Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 RBM4-207ENST00000506523 654 ntTSL 3 BASIC19.02■□□□□ 0.64
COL18A1P39060 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 F11R-204ENST00000537746 1245 ntTSL 2 BASIC19.02■□□□□ 0.64
COL18A1P39060 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 RN7SL556P-201ENST00000582856 298 ntBASIC19.02■□□□□ 0.64
COL18A1P39060 CYP4F36P-201ENST00000589193 186 ntBASIC19.02■□□□□ 0.64
COL18A1P39060 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL18A1P39060 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC19.02■□□□□ 0.64
COL18A1P39060 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC19.02■□□□□ 0.64
COL18A1P39060 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.02■□□□□ 0.64
COL18A1P39060 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
COL18A1P39060 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL18A1P39060 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
COL18A1P39060 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL18A1P39060 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 PTGER4P2-201ENST00000328411 252 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 GEMIN8P4-201ENST00000380526 729 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC19.01■□□□□ 0.63
COL18A1P39060 PTGER4P3-201ENST00000458150 252 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL18A1P39060 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 KRT18P37-201ENST00000520711 1282 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC19.01■□□□□ 0.63
COL18A1P39060 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 RARS-210ENST00000626454 177 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL18A1P39060 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 ODCP-201ENST00000459650 1639 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC19.01■□□□□ 0.63
COL18A1P39060 CISD2-202ENST00000503643 808 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 ABHD17AP9-201ENST00000561925 548 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 AL139339.2-201ENST00000608063 657 ntBASIC19.01■□□□□ 0.63
COL18A1P39060 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL18A1P39060 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL18A1P39060 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC19.01■□□□□ 0.63
COL18A1P39060 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC19■□□□□ 0.63
COL18A1P39060 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19■□□□□ 0.63
COL18A1P39060 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 GRPEL2P1-201ENST00000453145 339 ntBASIC19■□□□□ 0.63
COL18A1P39060 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL18A1P39060 PFN2-212ENST00000490975 858 ntTSL 4 BASIC19■□□□□ 0.63
COL18A1P39060 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL18A1P39060 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC19■□□□□ 0.63
COL18A1P39060 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL18A1P39060 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 PDXDC2P-206ENST00000534700 1315 ntBASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms