Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTPN4P29074 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN4P29074 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 ARSEP1-201ENST00000420443 635 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 ATP5G2P4-201ENST00000442175 420 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.1■□□□□ 0.01
PTPN4P29074 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN4P29074 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
PTPN4P29074 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
PTPN4P29074 AC023310.3-201ENST00000557027 670 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.1■□□□□ 0.01
PTPN4P29074 AC100756.1-201ENST00000562736 682 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 AC138749.3-201ENST00000567691 622 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 AL450472.2-201ENST00000603663 1156 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 AC116165.1-201ENST00000611806 668 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 IGHV3-72-202ENST00000621503 303 ntBASIC15.1■□□□□ 0.01
PTPN4P29074 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.1■□□□□ 0.01
PTPN4P29074 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.1■□□□□ 0.01
PTPN4P29074 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTPN4P29074 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.09■□□□□ 0.01
PTPN4P29074 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 AC105206.1-202ENST00000314927 2368 ntBASIC15.09■□□□□ 0.01
PTPN4P29074 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN4P29074 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.09■□□□□ 0.01
PTPN4P29074 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN4P29074 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 MYCLP2-201ENST00000449268 967 ntBASIC15.09■□□□□ 0.01
PTPN4P29074 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.09■□□□□ 0.01
PTPN4P29074 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN4P29074 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.09■□□□□ 0.01
PTPN4P29074 TIMM17BP1-201ENST00000545713 516 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms