Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SL560P-201ENST00000577943 264 ntBASIC13.74□□□□□ -0.21
MSX1P28360 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 GNRHR2-203ENST00000581100 1187 ntBASIC13.74□□□□□ -0.21
MSX1P28360 AC244669.2-201ENST00000612320 853 ntBASIC13.74□□□□□ -0.21
MSX1P28360 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX1P28360 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 AL139099.5-201ENST00000635274 300 ntBASIC13.74□□□□□ -0.21
MSX1P28360 AC008687.7-202ENST00000637404 953 ntBASIC13.74□□□□□ -0.21
MSX1P28360 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MSX1P28360 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX1P28360 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
MSX1P28360 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 GPAA1P2-201ENST00000417923 928 ntBASIC13.73□□□□□ -0.21
MSX1P28360 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 RPL13AP20-201ENST00000459725 609 ntBASIC13.73□□□□□ -0.21
MSX1P28360 RNA5SP486-201ENST00000515961 83 ntBASIC13.73□□□□□ -0.21
MSX1P28360 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX1P28360 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 LINC02228-204ENST00000642115 2962 ntBASIC13.73□□□□□ -0.21
MSX1P28360 AC144831.1-201ENST00000573312 2656 ntBASIC13.73□□□□□ -0.21
MSX1P28360 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX1P28360 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
MSX1P28360 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX1P28360 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
MSX1P28360 AC013726.1-201ENST00000563747 2285 ntBASIC13.73□□□□□ -0.21
MSX1P28360 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX1P28360 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 LINC00528-201ENST00000600723 2160 ntBASIC13.72□□□□□ -0.21
MSX1P28360 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
MSX1P28360 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
MSX1P28360 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX1P28360 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms