Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
COL3A1P02461 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.31■□□□□ 0.68
COL3A1P02461 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 AC012618.1-201ENST00000461223 412 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 RN7SL277P-201ENST00000481521 288 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.31■□□□□ 0.68
COL3A1P02461 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.31■□□□□ 0.68
COL3A1P02461 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
COL3A1P02461 AL133499.1-201ENST00000596207 608 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 AC015967.2-201ENST00000624092 234 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 AC006435.4-201ENST00000625037 234 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 AL356737.1-201ENST00000634391 234 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.31■□□□□ 0.68
COL3A1P02461 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC19.31■□□□□ 0.68
COL3A1P02461 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
COL3A1P02461 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.31■□□□□ 0.68
COL3A1P02461 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC19.31■□□□□ 0.68
COL3A1P02461 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.31■□□□□ 0.68
COL3A1P02461 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 AC015909.3-201ENST00000572855 1794 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC19.3■□□□□ 0.68
COL3A1P02461 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 AC091046.1-201ENST00000331871 207 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL3A1P02461 OR2K2-202ENST00000374428 1038 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.3■□□□□ 0.68
COL3A1P02461 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.3■□□□□ 0.68
COL3A1P02461 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 RPS9P1-201ENST00000419943 583 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.3■□□□□ 0.68
COL3A1P02461 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC19.3■□□□□ 0.68
COL3A1P02461 AC245884.6-201ENST00000515672 1067 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 PHBP15-201ENST00000574228 665 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC19.3■□□□□ 0.68
COL3A1P02461 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC19.3■□□□□ 0.68
COL3A1P02461 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 FRMPD2B-201ENST00000431305 1347 ntBASIC19.3■□□□□ 0.68
COL3A1P02461 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL3A1P02461 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL3A1P02461 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL3A1P02461 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL3A1P02461 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 RN7SL720P-201ENST00000488178 304 ntBASIC19.29■□□□□ 0.68
COL3A1P02461 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COL3A1P02461 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.29■□□□□ 0.68
COL3A1P02461 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 BCL2-203ENST00000589955 5011 ntBASIC19.29■□□□□ 0.68
COL3A1P02461 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC19.29■□□□□ 0.68
COL3A1P02461 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL3A1P02461 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC19.29■□□□□ 0.68
COL3A1P02461 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC19.28■□□□□ 0.68
COL3A1P02461 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 AC106872.11-201ENST00000605838 421 ntBASIC19.28■□□□□ 0.68
COL3A1P02461 CMC2-224ENST00000630396 481 ntTSL 5 BASIC19.28■□□□□ 0.68
COL3A1P02461 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL3A1P02461 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC19.28■□□□□ 0.68
COL3A1P02461 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms