Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 NME1-209ENST00000511355 1645 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PCDHB18P-202ENST00000526308 3197 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 MRPL3P1-201ENST00000400109 1033 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CENPM-204ENST00000402420 688 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 EEF1DP4-201ENST00000446006 880 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PRYP6-201ENST00000514804 343 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AC109635.5-201ENST00000533593 962 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AC012640.2-201ENST00000561606 901 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AC117500.6-201ENST00000624871 588 ntBASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DQA1P01909 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 MRPL20P1-201ENST00000400819 433 ntBASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 KRT18P27-201ENST00000427733 1299 ntBASIC11.3□□□□□ -0.6
HLA-DQA1P01909 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AC098831.1-202ENST00000438821 336 ntBASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DQA1P01909 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms