Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
KCMF1Q9P0J7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.21□□□□□ -0.13
KCMF1Q9P0J7 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
KCMF1Q9P0J7 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 MIR658-201ENST00000385210 100 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 C2orf27AP3-201ENST00000434123 579 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 RNA5SP486-201ENST00000515961 83 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 MIR6805-201ENST00000615055 62 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AL354718.3-201ENST00000616414 581 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 CR382287.1-201ENST00000623954 586 ntBASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
KCMF1Q9P0J7 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 AC003102.2-201ENST00000589195 1469 ntBASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 AL138725.1-201ENST00000407347 1314 ntBASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 AC007326.2-201ENST00000624224 7579 ntBASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
KCMF1Q9P0J7 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms