Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCPP55072 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
VCPP55072 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
VCPP55072 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
VCPP55072 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCPP55072 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 FAM197Y7-201ENST00000432892 766 ntBASIC16.08■□□□□ 0.16
VCPP55072 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 RN7SL720P-201ENST00000488178 304 ntBASIC16.08■□□□□ 0.16
VCPP55072 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 AC078819.1-201ENST00000547454 765 ntBASIC16.08■□□□□ 0.16
VCPP55072 AC012085.1-201ENST00000548270 765 ntBASIC16.08■□□□□ 0.16
VCPP55072 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 AC107373.2-201ENST00000607735 490 ntBASIC16.08■□□□□ 0.16
VCPP55072 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 AL096828.3-201ENST00000615354 462 ntBASIC16.08■□□□□ 0.16
VCPP55072 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.08■□□□□ 0.16
VCPP55072 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
VCPP55072 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.08■□□□□ 0.16
VCPP55072 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.08■□□□□ 0.16
VCPP55072 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.08■□□□□ 0.16
VCPP55072 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCPP55072 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VCPP55072 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 AC006001.1-201ENST00000325130 474 ntBASIC16.07■□□□□ 0.16
VCPP55072 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 AL133267.1-201ENST00000398220 340 ntBASIC16.07■□□□□ 0.16
VCPP55072 GHSR-202ENST00000427970 912 ntBASIC16.07■□□□□ 0.16
VCPP55072 AC114501.1-201ENST00000445949 172 ntBASIC16.07■□□□□ 0.16
VCPP55072 AC008267.1-201ENST00000474858 1069 ntBASIC16.07■□□□□ 0.16
VCPP55072 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.07■□□□□ 0.16
VCPP55072 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.07■□□□□ 0.16
VCPP55072 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.07■□□□□ 0.16
VCPP55072 AP003419.4-201ENST00000616071 517 ntBASIC16.07■□□□□ 0.16
VCPP55072 AC138951.2-201ENST00000623455 1161 ntBASIC16.07■□□□□ 0.16
VCPP55072 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.07■□□□□ 0.16
VCPP55072 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
VCPP55072 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.07■□□□□ 0.16
VCPP55072 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.07■□□□□ 0.16
VCPP55072 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VCPP55072 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.06■□□□□ 0.16
VCPP55072 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VCPP55072 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
VCPP55072 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms