Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL18A1P39060 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC19.05■□□□□ 0.64
COL18A1P39060 RN7SL455P-201ENST00000580629 282 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 AC010632.2-201ENST00000588369 1224 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 PEBP1P2-201ENST00000603980 558 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 AC008972.2-201ENST00000606587 494 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC19.05■□□□□ 0.64
COL18A1P39060 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC19.05■□□□□ 0.64
COL18A1P39060 AC018442.1-201ENST00000421439 2061 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL18A1P39060 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC19.04■□□□□ 0.64
COL18A1P39060 AC006987.1-201ENST00000413610 527 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 STK24P1-201ENST00000455035 1291 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 AC092862.1-201ENST00000541534 533 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 AC091769.1-201ENST00000619576 568 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC19.04■□□□□ 0.64
COL18A1P39060 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL18A1P39060 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 BX679664.3-201ENST00000414070 555 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 OR52M2P-201ENST00000414298 959 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 EEF1DP2-201ENST00000433698 843 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC19.04■□□□□ 0.64
COL18A1P39060 AC113935.1-201ENST00000471722 555 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 RN7SL582P-201ENST00000491078 279 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 ALG1L3P-201ENST00000503331 765 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 AC005586.2-201ENST00000563946 837 ntBASIC19.04■□□□□ 0.64
COL18A1P39060 HPX-213ENST00000615166 826 ntTSL 5 BASIC19.04■□□□□ 0.64
COL18A1P39060 AC091951.1-201ENST00000512854 2465 ntBASIC19.03■□□□□ 0.64
COL18A1P39060 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 ZNF436-AS1-201ENST00000335648 2547 ntBASIC19.03■□□□□ 0.64
COL18A1P39060 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC19.03■□□□□ 0.64
COL18A1P39060 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL18A1P39060 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 MIR566-201ENST00000385187 94 ntBASIC19.03■□□□□ 0.64
COL18A1P39060 RN7SL767P-201ENST00000493013 295 ntBASIC19.03■□□□□ 0.64
COL18A1P39060 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC19.03■□□□□ 0.64
COL18A1P39060 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL18A1P39060 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 AC007950.2-201ENST00000615045 2347 ntBASIC19.03■□□□□ 0.64
COL18A1P39060 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL18A1P39060 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 KRT8P18-201ENST00000413425 1445 ntBASIC19.02■□□□□ 0.64
COL18A1P39060 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC19.02■□□□□ 0.64
COL18A1P39060 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 AL354702.1-201ENST00000442006 1960 ntBASIC19.02■□□□□ 0.64
COL18A1P39060 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL18A1P39060 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms