Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 VPS51-217ENST00000639871 243 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 AC131902.2-201ENST00000566892 2172 ntBASIC11.33□□□□□ -0.6
HLA-DQA1P01909 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DQA1P01909 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AC020910.6-201ENST00000623084 1459 ntBASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 SLC4A1APP2-201ENST00000424054 1259 ntBASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 HNRNPDP1-201ENST00000439535 754 ntBASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 PENK-208ENST00000523051 772 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 CBFB-203ENST00000561924 584 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 MIR7706-201ENST00000613747 67 ntBASIC11.32□□□□□ -0.6
HLA-DQA1P01909 FAM215A-202ENST00000632077 792 ntBASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DQA1P01909 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms