Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HMGB4Q8WW32 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AL138725.1-201ENST00000407347 1314 ntBASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC006480.2-201ENST00000609770 1337 ntBASIC14.98□□□□□ -0.01
HMGB4Q8WW32 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AL353637.1-201ENST00000451571 732 ntBASIC14.98□□□□□ -0.01
HMGB4Q8WW32 LDHBP1-201ENST00000455730 1119 ntBASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC116345.2-201ENST00000512837 523 ntBASIC14.98□□□□□ -0.01
HMGB4Q8WW32 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HMGB4Q8WW32 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC009779.1-201ENST00000551138 283 ntBASIC14.97□□□□□ -0.01
HMGB4Q8WW32 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC103988.2-201ENST00000561804 725 ntBASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AC005962.1-201ENST00000584100 773 ntBASIC14.97□□□□□ -0.01
HMGB4Q8WW32 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 AP000346.4-201ENST00000614827 381 ntBASIC14.97□□□□□ -0.01
HMGB4Q8WW32 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HMGB4Q8WW32 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms